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How to prepare coverage_values.tsv file? #22

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WoCer2019 opened this issue May 22, 2023 · 1 comment
Open

How to prepare coverage_values.tsv file? #22

WoCer2019 opened this issue May 22, 2023 · 1 comment

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@WoCer2019
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Hi,

Thanks for the excellent tool! I have identified viral contigs from all samples and compiled them. Then, how to prepare coverage_values.tsv file? Can coverM https://github.com/wwood/CoverM achieve this goal? If ok, choose which calculation methods of coverage (-m option)?

Best wishes!

Warren Yates
@KrisKieft
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Hi, vRhyme has built in functionality to do this. I am not sure how coverM generates coverage.

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@KrisKieft @WoCer2019