Skip to content

Issues: AnantharamanLab/vRhyme

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 9 Closed
28 Open 9 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

No bins created-- did we do something wrong or are there really no bins?
#37 opened Oct 18, 2024 by rikander
5
Can you provide the code for evaluating the performance?
#36 opened Oct 1, 2024 by jiaojiaoguan
1
vRhyme error code
#35 opened Jun 26, 2024 by kangeun-kim
1
p
#34 opened Mar 29, 2024 by clementcoclet
Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.
#33 opened Mar 21, 2024 by metapanpanwang
2
Error after Performing machine learning classification
#32 opened Mar 12, 2024 by Aciole-David
2
One merged fa can't not map to 63 individual bam file
#31 opened Mar 11, 2024 by Rhettbest
2
Dereplication. Question.
#29 opened Dec 25, 2023 by SergeyBaikal
No bins generated, bug or feature?
#28 opened Nov 30, 2023 by Joon-Klaps
2
[Question] Is this for binning contigs from the same viral genome or clustering viral genomes?
#27 opened Oct 18, 2023 by jolespin
3
Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.
#26 opened Sep 18, 2023 by haleyhallowell
3
question about using vRhyme
#25 opened Sep 12, 2023 by liucong2016
1
i made a mistake. i have no idea with it. need some help
#24 opened Jul 6, 2023 by liucong2016
12
How to prepare coverage_values.tsv file?
#22 opened May 22, 2023 by WoCer2019
1
Program trying to read from non-existing output file
#21 opened Feb 9, 2023 by minna-miha
@cody-mar10
6
I encountered an error using the script coverage_table_convert.py
#20 opened Feb 7, 2023 by rdenise
1
High number of bacterial genes in vRhyme bins
#19 opened Jan 11, 2023 by ShailNair
6
Training DATA AVAILABILITY
#17 opened Oct 17, 2022 by Nianzhen-GU
performing taxonomy classifications on vrhyme bins
#16 opened Sep 22, 2022 by AJWing
1
How to know which viral sequences are not used in binning?
#15 opened Sep 22, 2022 by AJWing
4
Issue on the clustering algorithm
#14 opened Sep 6, 2022 by dyxstat
1
vRhyme_nucmer_delta_parsed.tsv not found
#12 opened Sep 1, 2022 by XiongGZ
2
Regarding dereplication of bins question Further information is requested
#10 opened Jul 7, 2022 by ShailNair
4
input file if relative path seems don't work well bug Something isn't working
#6 opened May 26, 2022 by zpinocchio
1
Interpretation of results question Further information is requested
#5 opened Mar 23, 2022 by michoug
3
ProTip! Follow long discussions with comments:>50.