Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.

[metapanpanwang]

Hi Kris,
I have predicted viral scaffolds from 54 samples assemblies. I tried to use：
vRhyme -i fasta -r paired_reads_folder/*.fastq -t threads -o output_folder --method longest
But it shows an error：
Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.

[KrisKieft]

Can you provide the exact command and/or the log file contents?

[FionaLiu829]

Hi Kris,
I also have the same error.
My log file contents:
Command: /opt/anaconda3/bin/vRhyme -i contigs.fasta -ccontigs.csv -t 10 --iter 10 -o output_folder --method longest

Date: 2024-10-27 (y-m-d)
Start: 15:03:17 (h:m:s)
Program: vRhyme v1.1.0

Time (min) | Log

0.0 Initializing and validating vRhyme parameters
0.01 Running 'longest' dereplication: 97% identity and 70% coverage
0.17 No sequences were of sufficient similarity to dereplicate
0.17 Performing pairwise coverage comparisons

Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.