Merge pull request #99 from B612-Asteroid-Institute/nt/adam-core-inte…

…rnals

Add parallel precovery_db implementation that uses adam_core orbits/propagation

.github/workflows/lint-test.yml

@@ -2,28 +2,48 @@ name: Lint and Test
 
 on:
   push:
-    branches: [ main ]
+    branches: [ main, "v*"]
   pull_request:
-    branches: [ main ]
+    branches: [ main, "v*"]
 
 jobs:
   build-lint-test:
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.11"]
     env:
       IMAGE_TAG: ${{ github.sha }}
     steps:
       - name: Checkout git repo
-        uses: actions/checkout@v2
-      - uses: jpribyl/[email protected]
-        # Ignore the failure of a step and avoid terminating the job.
-        continue-on-error: true
-      - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v2
+        uses: actions/checkout@v3
+      - name: Get git tags
+        run:  git fetch --prune --unshallow --tags
+      - uses: actions/setup-python@v4
         with:
-          install: true
-      - name: Build Precovery in Docker
-        run: docker build --load -t precovery:$IMAGE_TAG .
-      - name: lint
-        run: docker run -i precovery:$IMAGE_TAG pre-commit run --all-files
-      - name: lint tests
-        run: docker run -i precovery:$IMAGE_TAG pytest --exitfirst .
+          python-version: ${{ matrix.python-version }}
+          cache: "pip"
+      # Use pip to install dependencies
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install ".[dev]"
+      # Run linter
+      - name: Run linter
+        run: |
+          pdm run check
+      # Get JPL ephemeris files
+      - name: Get JPL ephemeris files
+        run: |
+          python scripts/set_up_assist.py
+      - name: Set JPL ephemeris environment variable
+        run: |
+          export ASSIST_DATA_DIR=~/.adam_assist_data
+      # Run tests
+      - name: Run tests
+        run: |
+          pdm run coverage
+      - name: Coveralls
+        uses: coverallsapp/[email protected]
+        with:
+          path-to-lcov: coverage.xml

.gitignore

@@ -44,12 +44,14 @@ pip-delete-this-directory.txt
 # Unit test / coverage reports
 htmlcov/
 .tox/
+.nox/
 .coverage
 .coverage.*
 .cache
 nosetests.xml
 coverage.xml
 *.cover
+*.py,cover
 .hypothesis/
 .pytest_cache/
 
@@ -116,5 +118,5 @@ volume/
 ^data/
 out/
 database/
-precovery/version.py
 .docker_bash_history.txt
+*.DS_Store

README.md

@@ -11,11 +11,6 @@
 
 ## Installation
 
-### Docker
-You can build and use precovery using the Dockerfile and docker-compose.yml
-`docker compose build`
-`docker compose run -it precovery bash`
-
 ### Conda
 
 To get the latest released version and install it into a conda environment:  
@@ -27,13 +22,6 @@ To install the bleeding edge source code, clone this repository and then:
 
 `pip install .`  
 
-
-#### openorb
-
-Note that, `openorb` is not available on the Python Package Index and so you wil need
-to install it via source or conda. See the `Dockerfile` for example of how to build on Ubuntu linux.
-
-
 #### healpy
 
 `healpy` is available on PyPI, but as of version 1.16.2, only x86_64 wheels are published.