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46 Open 94 Closed
46 Open 94 Closed
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Issues list

new duplicate marking tool
#198 opened Mar 19, 2025 by alexg9010
Error in getTabixByChunk
#190 opened Mar 31, 2023 by fafaris39
1
possibility to quickly rerun given target, without all upstream rules
#188 opened Oct 6, 2022 by alexg9010
forced rerun not possible with write-protected output bug
#187 opened Oct 6, 2022 by alexg9010
steps to run make distcheck via Github actions take quite long with caching
#186 opened Sep 7, 2022 by alexg9010
3
Consider option to add spike-in genome for calculation of bisulfite conversion rate
#185 opened Aug 11, 2022 by alexg9010
Catch error during final report rendering when refgene and cpgislandfile are not given
#184 opened Aug 10, 2022 by alexg9010
Use asis engine for conditional printing of markdown chunks
#182 opened Aug 2, 2022 by alexg9010
try unit test generation feature of snakemake
#180 opened May 13, 2022 by alexg9010
describe how to get gene prediction files from ucsc table browser or link to source where it is described
#179 opened Nov 29, 2021 by alexg9010
allow users to fetch other ucsc gene prediction tables
#178 opened Nov 29, 2021 by alexg9010
rename targets to rule names
#177 opened Nov 29, 2021 by alexg9010
1
collate targets to workflows
#176 opened Nov 29, 2021 by alexg9010
improve the printing of available targets
#175 opened Nov 29, 2021 by alexg9010
Skip check for Bisulfite Genome Folder if use_bismark is false
#174 opened Nov 29, 2021 by alexg9010
Update manual on github
#173 opened Nov 24, 2021 by katwre
1
if diffmeth section is commented out, leads to error
#172 opened Nov 19, 2021 by alexg9010
1
evaluate switch from trim galore to fastp read trimming
#171 opened Jun 8, 2021 by alexg9010
1
pre-screening to figure out the required settings
#170 opened May 7, 2021 by alexg9010
error when destranding during exporting bigwig breaks on 'real data' bug
#169 opened May 3, 2021 by alexg9010
Describe format of DMR bed files in report and/or docs
#167 opened Nov 24, 2020 by alexg9010
Missing chromosomal position in mthyl call
#166 opened Nov 9, 2020 by devenderarora
5
"make check" fails (out of memory?)
#164 opened Aug 16, 2020 by rekado
1
Allow covariates for differential analysis
#163 opened Jul 30, 2020 by alexg9010
Tests fail on bwameth_align_trimmed
#161 opened Jul 29, 2020 by Blosberg
4
ProTip! no:milestone will show everything without a milestone.