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@BaderLab

Bader Lab, University of Toronto

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  1. saber saber Public

    Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not…

    Python 102 17

  2. CellAnnotationTutorial CellAnnotationTutorial Public

    Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

    HTML 93 26

  3. scClustViz scClustViz Public

    Explore and share your scRNAseq clustering results

    R 50 9

  4. Cytoscape_workflows Cytoscape_workflows Public

    collection of notebooks with different cytoscape workflows

    HTML 49 36

  5. Transfer-Learning-BNER-Bioinformatics-2018 Transfer-Learning-BNER-Bioinformatics-2018 Public

    This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical named entity recognition with neural networks.

    Python 37 6

  6. Biomedical-Corpora Biomedical-Corpora Public

    A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in biomedical text-mining and information extraction.

    36 4

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