Install R Wardrobe Library

To install wardrobe library in the Wardrobe source directory go to scripts/R run R CMD INSTALL wardrobe.

cd "/wardrobe/src/scripts/R"
R CMD INSTALL wardrobe

To install it globally with root credentials run ‘sudo R CMD INSTALL wardrobe’

Test the installation in R:

wardrobe@wardrobe:/wardrobe/src/scripts/R> R
R version 3.1.2 (2014-10-31) — “Pumpkin Helmet”

Copyright © 2014 The R Foundation for Statistical Computing

Platform: x86_64-suse-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.

You are welcome to redistribute it under certain conditions.

Type ‘license()’ or ‘licence()’ for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.

Type ‘contributors()’ for more information and

‘citation()’ on how to cite R or R packages in publications.
Type ‘demo()’ for some demos, ‘help()’ for on-line help, or

‘help.start()’ for an HTML browser interface to help.

Type ‘q()’ to quit R.
> library(“wardrobe”)

Loading required package: DBI

Loading required package: RMySQL

Loading required package: Rsamtools

Loading required package: S4Vectors

Loading required package: stats4

Loading required package: BiocGenerics

Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from ‘package:stats’:
xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, as.vector, cbind, colnames,
do.call, duplicated, eval, evalq, Filter, Find, get, intersect,
is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rep.int,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unlist, unsplit
Loading required package: IRanges

Loading required package: GenomeInfoDb

Loading required package: GenomicRanges

Loading required package: XVector

Loading required package: Biostrings

Loading required package: BiocParallel

Loading required package: GenomicAlignments