Update JSON to YAML

Barski-lab · Jan 29, 2018 · 77330fa · 77330fa
1 parent 197f23b
commit 77330fa
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Showing 2 changed files with 23 additions and 14 deletions.
diff --git a/biowardrobe_chipseq_se.json b/biowardrobe_chipseq_se.json
diff --git a/biowardrobe_chipseq_se.yaml b/biowardrobe_chipseq_se.yaml
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+fastq_file:
+  class: File
+  location: "./data/inputs/SRR1198790.fastq"
+  format: "http://edamontology.org/format_1930"
+indices_folder:
+  class: Directory
+  location: "./data/references/dm3/bowtie_indices"
+annotation_file:
+  class: File
+  location: "./data/references/dm3/refgene.tsv"
+  format: "http://edamontology.org/format_3475"
+chrom_length:
+  class: File
+  location: "./data/references/dm3/chrNameLength.txt"
+  format: "http://edamontology.org/format_2330"
+clip_3p_end: 0
+clip_5p_end: 0
+remove_duplicates: false
+exp_fragment_size: 150
+force_fragment_size: false
+broad_peak: false
+threads: 8
+genome_size: "1.2e8"