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@BioDT

BioDT

Horizon EU Biodiversity Digital Twin

BioDT GitHub Organisation

The repositories here contain codes and material developed within the BioDT project funded by the European Union's Horizon Europe research and innovation programme under grant agreement No 101057437.

Prototype Digital Twins (pDTs)

The pDTs have been developed within the BioDT use cases (UCs), and the codes are available in the corresponding repositories:

BioDT web application app.biodt.eu

The codes for the BioDT shiny web app are available here.


Guidelines for naming new repositories

  • Use lower-case letters where possible.
  • General-use features identified by adding general to the beginning of the repository name, e.g. general-datamover.
  • Use case-specific code similarly identified by uc and the name of the UC, e.g. uc-grassland.

Separate features (such as individual digital twin components) may be kept in folders inside a given repository. In case it is preferable to create a separate repository for a feature, the name of the feature should be added to the end of the repository name (e.g. uc-grassland-feature1).

Popular repositories Loading

  1. biodt-shiny biodt-shiny Public

    This repository contains a shiny application which is intended as the simplest way of interacting with BioDT by end-users.

    R 6 3

  2. biodt-fair biodt-fair Public

    Examples, resources, and other materials related to FAIR in BioDT.

    Python 4 2

  3. uc-ces uc-ces Public

    Modelling code for cultural ecosystem services pDT within BioDT

    R 2 1

  4. uc-CWR uc-CWR Public

    The code base for the Crop-Wild-Relative (CWR) Biodiversity Digital Twin use-case led by UiO

    R 2 4

  5. dddas4dt dddas4dt Public

    Forked from thisistaimur/dddas4dt

    Workshop @ European Conference on Ecological Modelling 2023 || Webpage: https://biodt.github.io/dddas4dt/

    2

  6. uc-pollinators uc-pollinators Public

    Honeybee pDT / pollinators UC main repository

    R 2

Repositories

Showing 10 of 23 repositories
  • beehave-go-r Public
    BioDT/beehave-go-r’s past year of commit activity
    R 1 0 0 0 Updated Apr 4, 2025
  • uc-ces-recreation2 Public

    Development version of the recreation potential model

    BioDT/uc-ces-recreation2’s past year of commit activity
    R 0 0 21 0 Updated Apr 3, 2025
  • general-soilgrids-soil-data Public

    Building block for obtaining selected soil data at given location from SoilGrids and derived data sources (Soilgrids REST API, HiHydroSoil map).

    BioDT/general-soilgrids-soil-data’s past year of commit activity
    Python 1 EUPL-1.2 2 0 0 Updated Apr 3, 2025
  • general-copernicus-weather-data Public

    Building block for obtaining selected weather data at given location (0.1° x 0.1° spatial resolution) for desired time periods, at hourly resolution, e.g. from Copernicus ERA5-Land dataset

    BioDT/general-copernicus-weather-data’s past year of commit activity
    Python 0 EUPL-1.2 0 0 0 Updated Apr 3, 2025
  • biodt-shiny Public

    This repository contains a shiny application which is intended as the simplest way of interacting with BioDT by end-users.

    BioDT/biodt-shiny’s past year of commit activity
    R 6 3 17 0 Updated Apr 3, 2025
  • uc-CWR Public

    The code base for the Crop-Wild-Relative (CWR) Biodiversity Digital Twin use-case led by UiO

    BioDT/uc-CWR’s past year of commit activity
    R 2 MIT 4 6 1 Updated Apr 2, 2025
  • IASDT.R Public

    R package to support the invasive alien species (IAS) prototype Digital Twin (IAS-pDT), as part of the EU-funded BioDT project.

    BioDT/IASDT.R’s past year of commit activity
    R 1 0 0 0 Updated Mar 27, 2025
  • Hackathon25 Public

    BioDT School and Hackathon 2025

    BioDT/Hackathon25’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Mar 21, 2025
  • biodt-fair Public

    Examples, resources, and other materials related to FAIR in BioDT.

    BioDT/biodt-fair’s past year of commit activity
    Python 4 EUPL-1.2 2 6 0 Updated Mar 3, 2025
  • BioDT/uc-forest-bird’s past year of commit activity
    R 0 MIT 1 0 0 Updated Feb 27, 2025

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