Code

Breaking changes for V1#95

Code

Merged

jakobnissen merged 60 commits intoBioJulia:v1BioJulia/Automa.jl:v1from jakobnissen:v1jakobnissen/Automa.jl:v1Copy head branch name to clipboardMar 9, 2023

+3,952-1,666

Commits

Commits on Mar 8, 2023

• Remove dependency on Printf

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• Remove SIMD and inline generator

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• Remove loop unrolling

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• Allow CodeGenContext to be elided

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• Update benchmarks

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• Saner default for p_eof and p_end

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• Add generate_code convenience function

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• Add validator convenience function

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• Enable ambiguity check

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• Enforce action dict symbols are same as machines

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• Add check for invalid RE.action keys

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• Add input error code to generate_code function

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• Export user-facing names

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• Check preconditions before declaring NFA ambiguous

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• Fix EOF check in machine error code

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• Do not store gensym symbols in default CodeGenContext

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• Add more comments

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• Also trigger default error when cs > 0

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• Remove checkbounds option

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• Make clean work

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• Make Variables easier to construct

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• Add tests for regex set operations

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• Minor polish

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• Rename p_eof to is_eof

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• Comment generate_reader better

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• Small tweaks

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• Add default error in generated reader function

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• Fix bug in execute_debug

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• Export machine2dot

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• Make more use of magical macros

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• Add generate_io_validator

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• Add documentation to pseudomacros

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• Remove dead eps nodes

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• Remove last Stream non-pseudomacros

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• Remove Stream module

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• Simplify Machine struct layout

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• Fix warnings when running tests

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• Disallow direct modification of actions field

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• Use using over import

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• Update FASTA example

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• Disallow final actions in looping regex

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• WIP: Tokenizer: Remove deprecated method

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• Make TranscodingStreams an optional dependency

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• Error with shortest known ambiguity

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• Also check ambiguities for final and all actions

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• Rewrite tokenizer

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• Rename generate_validator_function

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• Export regex struct instead of module

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• Tweak: Allow | and & ops b/w chars/str and RE

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• Remove report_col kwarg

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• Add SnoopPrecompile

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• Rewrite documentation

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• Add figures to docs

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• Bump CI version to Julia 1.6

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• Support Julia version 1.6

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• Make generate_buffer_validator goto into kwarg

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• SnoopPrecompile more stuff

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Commits on Mar 9, 2023

• Various small fixes to documentation

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• Update README.md

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• Add documentation preview

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