Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add quality and sequence iterator #41

Merged
merged 2 commits into from
Mar 3, 2021

Conversation

jakobnissen
Copy link
Member

As described in #40 , this adds a small PR to obtain the sequence and quality from FASTA/FASTQ files without allocating a new vector.

@codecov
Copy link

codecov bot commented Feb 28, 2021

Codecov Report

Merging #41 (72aadd2) into master (b1a8ecb) will increase coverage by 0.21%.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #41      +/-   ##
==========================================
+ Coverage   87.51%   87.73%   +0.21%     
==========================================
  Files          14       14              
  Lines         633      644      +11     
==========================================
+ Hits          554      565      +11     
  Misses         79       79              
Flag Coverage Δ
unittests 87.73% <100.00%> (+0.21%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
src/fasta/fasta.jl 100.00% <ø> (ø)
src/fasta/record.jl 79.71% <100.00%> (+0.76%) ⬆️
src/fastq/record.jl 83.45% <100.00%> (+0.78%) ⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update b1a8ecb...6b0f588. Read the comment docs.

@jakobnissen jakobnissen merged commit e72dcfe into BioJulia:master Mar 3, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant