Fix error in PAF file (#11)

Also add an unmapped PAF file
BioJulia · Jun 21, 2024 · 388af9b · 388af9b · jakobnissen · Jun 21, 2024
1 parent b1a9a76
commit 388af9b
Show file tree

Hide file tree

Showing 4 changed files with 10 additions and 2 deletions.
diff --git a/PAF/good2.paf b/PAF/good2.paf
@@ -1,4 +1,4 @@
-中国科学院大学	2147483647	3	301145	+	CP004047.1	6701780	6115750	6416892	301142	301142	0	tp:A:S	cm:i:29990	s1:i:301142	dv:f:-13.2442e-18	rl:i:0000	xX:H:ea19fe1b	K1:B:c15,9,22,127,-12,-128,0
+中国科学院大学	2147483647	3	301145	+	CP004047.1	6701780	6115750	6416892	301142	301142	0	tp:A:S	cm:i:29990	s1:i:301142	dv:f:-13.2442e-18	rl:i:0000	xX:H:ea19fe1b	K1:B:c,15,9,22,127,-12,-128,0
 [[[\]\]]	299273	0	299273	-	CP015426.1	3334732	950389	1249662	299269	299273	0	dv:f:1.243e-4	rl:i:38	kk:Z:!=[]! And then~~  
 	299273	0	299273	+	CP015427.1	3346636	2317212	2622051	299252	304839	0	dv:f:+17e21	rl:i:38
 

diff --git a/PAF/good3.paf b/PAF/good3.paf
@@ -0,0 +1,2 @@
+query	56	3	52	*	*	5298872	2793194	2793243	49	49	0	tp:A:S	cm:i:4	s1:i:49	dv:f:0.0117	rl:i:0
+another	9	0	4	+	abc	5	1	5	4	4	0
diff --git a/PAF/index.toml b/PAF/index.toml
@@ -11,3 +11,9 @@ comments = [
     "Zero-length name field",
     "Various AUX tags",
 ]
+
+[[valid]]
+filename = "good3.paf"
+comments = [
+    "Unmapped record"
+]
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "FormatSpecimens"
 uuid = "3372ea36-2a1a-11e9-3eb7-996970b6ffbd"
 authors = ["Ben J. Ward <[email protected]"]
-version = "1.2.0"
+version = "1.3.0"
 
 [deps]
 TOML = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		query 56 3 52 * * 5298872 2793194 2793243 49 49 0 tp:A:S cm:i:4 s1:i:49 dv:f:0.0117 rl:i:0
		another 9 0 4 + abc 5 1 5 4 4 0