Merge pull request #51 from camilogarciabotero/develop #333
Annotations
3 errors, 10 warnings, and 1 notice
Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Documenter.jl#L652
Git failed to fetch [email protected]:BioJulia/GenomicFeatures.jl.git
This can be caused by a DOCUMENTER_KEY variable that is not correctly set up.
Make sure that the environment variable is properly set up as a Base64-encoded string
of the SSH private key. You may need to re-generate the keys with DocumenterTools.
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Documenter.jl#L777
Failed to push:
exception =
failed process: Process(setenv(`/usr/bin/git fetch upstream`,["DOCUMENTER_KEY=***", "PATH=/opt/hostedtoolcache/julia/1.10.5/x64/bin:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin", "DOTNET_SKIP_FIRST_TIME_EXPERIENCE=1", "GITHUB_RUN_NUMBER=333", "GITHUB_REF_NAME=develop", "RUNNER_ARCH=X64", "PERFLOG_LOCATION_SETTING=RUNNER_PERFLOG", "GOROOT_1_20_X64=/opt/hostedtoolcache/go/1.20.14/x64", "ACCEPT_EULA=Y", "GOROOT_1_21_X64=/opt/hostedtoolcache/go/1.21.13/x64", "ANT_HOME=/usr/share/ant", "RUNNER_USER=runner", "LEIN_HOME=/usr/local/lib/lein", "GITHUB_REPOSITORY_ID=94160625", "GITHUB_ACTOR=MillironX", "GITHUB_WORKFLOW_REF=BioJulia/GenomicFeatures.jl/.github/workflows/Documentation.yml@refs/heads/develop", "ANDROID_NDK_LATEST_HOME=/usr/local/lib/android/sdk/ndk/27.1.12297006", "SYSTEMD_EXEC_PID=613", "RUNNER_ENVIRONMENT=github-hosted", "OPENBLAS_DEFAULT_NUM_THREADS=1", "GIT_TEMPLATE_DIR=/usr/share/git-core/templates", "STATS_D_D=true", "USER=runner", "CONDA=/usr/share/miniconda", "JULIA_PKG_SERVER_REGISTRY_PREFERENCE=eager", "GITHUB_REF_PROTECTED=false", "GITHUB_SHA=e3a1b88bb30249b6b3c0ff62de57aab97cc13351", "JAVA_HOME=/usr/lib/jvm/temurin-11-jdk-amd64", "GITHUB_API_URL=https://api.github.com", "GITHUB_RUN_ATTEMPT=1", "GITHUB_ACTIONS=true", "STATS_V3PS=true", "VCPKG_INSTALLATION_ROOT=/usr/local/share/vcpkg", "STATS_VMFE=true", "STATS_EXT=true", "ANDROID_SDK_ROOT=/usr/local/lib/android/sdk", "SWIFT_PATH=/usr/share/swift/usr/bin", "GITHUB_ENV=/home/runner/work/_temp/_runner_file_commands/set_env_9c9ac802-bd20-4ee2-9105-c6dece3b1e5e", "JAVA_HOME_17_X64=/usr/lib/jvm/temurin-17-jdk-amd64", "GITHUB_ACTION_PATH=/home/runner/work/_actions/julia-actions/julia-docdeploy/v1", "RUNNER_PERFLOG=/home/runner/perflog", "RUNNER_NAME=GitHub Actions 3", "EDGEWEBDRIVER=/usr/local/share/edge_driver", "GITHUB_RUN_ID=11128122102", "GHCUP_INSTALL_BASE_PREFIX=/usr/local", "ImageOS=ubuntu22", "NVM_DIR=/home/runner/.nvm", "GIT_SSH_COMMAND=ssh -F /tmp/jl_Bx6D1f", "GITHUB_HEAD_REF=", "GITHUB_RETENTION_DAYS=90", "GITHUB_SERVER_URL=https://github.com", "GITHUB_OUTPUT=/home/runner/work/_temp/_runner_file_commands/set_output_9c9ac802-bd20-4ee2-9105-c6dece3b1e5e", "STATS_UE=true", "STATS_BLT=true", "GITHUB_JOB=Documenter", "DEBIAN_FRONTEND=noninteractive", "RUNNER_TRACKING_ID=github_285a3f7a-d20d-44d0-840a-91eb8f2f28ba", "RUNNER_TOOL_CACHE=/opt/hostedtoolcache", "HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS=3650", "AZURE_EXTENSION_DIR=/opt/az/azcliextensions", "HOMEBREW_NO_AUTO_UPDATE=1", "CHROMEWEBDRIVER=/usr/local/share/chromedriver-linux64", "GITHUB_ACTION_REPOSITORY=", "GITHUB_WORKFLOW=Documentation", "GITHUB_ACTION=__julia-actions_julia-docdeploy", "HOME=/home/runner", "JAVA_HOME_8_X64=/usr/lib/jvm/temurin-8-jdk-amd64", "GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json", "GITHUB_STEP_SUMMARY=/home/runner/work/_temp/_runner_file_commands/step_summary_9c9ac802-bd20-4ee2-9105-c6dece3b1e5e", "SGX_AESM_ADDR=1", "GITHUB_REF=refs/heads/develop", "GITHUB_REPOSITORY=BioJulia/GenomicFeatures.jl", "INVOCATION_ID=f95e5ae9ae424b1298b1d04839081ac1", "ImageVersion=20240922.1.0", "JAVA_HOME_21_X64=/usr/lib/jvm/temurin-21-jdk-amd64", "ANDROID_NDK=/usr/local/lib/android/sdk/ndk/27.1.12297006", "LANG=C.UTF-8", "STATS_D=true", "GITHUB_GRAPHQL_URL=https://api.github.com/graphql", "SHLVL=1", "DOTNET_MULTILEVEL_LOOKUP=0", "XDG_RUNTIME_DIR=/run/user/1001", "GOROOT_1_22_X64=/opt/hostedtoolcache/go/1.22.7/x64", "RUNNER_WORKSPACE=/home/runner/work/GenomicFeatures.jl", "GITHUB_STATE=/home/runner/work/_temp/_runner_file_commands/save_state_9c9ac802-bd20-4ee2-9105-c6dece3b1e5e", "GITHUB_BASE_REF=", "_=/opt/hostedtoolcache/julia/1.10.5/x64/bin/julia", "GRADLE_HOME=/usr/share/gradle-8.10.1", "GITHUB_ACTION_REF=", "DEPLOYMENT_BASEPATH=/opt/runner", "PIPX_HOME=/opt/pipx", "GITHUB_REPOSITORY_OWNER_ID=6486271", "GITHUB_ACTOR_ID=25492070
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Documenter
Process completed with exit code 1.
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
no doc found for reference '[`Interval`](@ref)' in src/api/api.md.
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/DocChecks.jl#L248
linkcheck 'https://biojulia.github.io/GenomicFeatures.jl/stable' status: 301, redirects to 'https://biojulia.dev/GenomicFeatures.jl/stable'
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/DocChecks.jl#L248
linkcheck 'https://biojulia.github.io/GenomicFeatures.jl/dev/' status: 301, redirects to 'https://biojulia.dev/GenomicFeatures.jl/dev/'
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/DocChecks.jl#L248
linkcheck 'https://codecov.io/gh/BioJulia/GenomicFeatures.jl' status: 301, redirects to 'https://app.codecov.io/gh/BioJulia/GenomicFeatures.jl'
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/DocChecks.jl#L248
linkcheck 'https://opencollective.com/biojulia/sponsor/0/website' status: 301, redirects to 'https://triplebyte.com/os/opencollective?utm_source=opencollective&utm_medium=github&utm_campaign=biojulia'
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/DocChecks.jl#L248
linkcheck 'https://opencollective.com/biojulia/sponsor/1/website' status: 301, redirects to 'https://opencollective.com/biojulia?utm_source=opencollective&utm_medium=github&utm_campaign=biojulia#support'
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
linkcheck 'https://opencollective.com/biojulia/sponsor/2/website' status: 404.
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
linkcheck 'https://opencollective.com/biojulia/sponsor/3/website' status: 404.
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
linkcheck 'https://opencollective.com/biojulia/sponsor/4/website' status: 404.
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Documenter:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
linkcheck 'https://opencollective.com/biojulia/sponsor/5/website' status: 404.
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[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
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