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v0.16.0 #164

Merged
merged 34 commits into from
Feb 3, 2023
Merged

v0.16.0 #164

merged 34 commits into from
Feb 3, 2023

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jwindhager
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@jwindhager jwindhager commented Jan 30, 2023

Jonas Windhager added 7 commits January 25, 2023 21:55
simplified requirements
dependency upgrades (incl. tensorflow, cellprofiler)
restricted python to <3.11
prepare macos/arm64 Docker image (prepares #98)
add xpra-enabled Docker image

add view command (closes #27)
add apps jupyterlab command

upgrade workflows

fix pyproject.toml
setuptools devel extra

minor code improvements
run_captured now captures stderr
only call fixuid when $RUN_FIXUID is set (closes #156)
fix missing error message for non-existing related files (closes #151)
update test skeletons (prepares #95)

update mkdocs setup
rename framework to toolkit
update installation instructions (closes #160)
@jwindhager jwindhager added bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request labels Jan 30, 2023
@jwindhager jwindhager self-assigned this Jan 30, 2023
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codecov-commenter commented Jan 30, 2023

Codecov Report

Base: 32.61% // Head: 30.65% // Decreases project coverage by -1.97% ⚠️

Coverage data is based on head (c050e87) compared to base (f05cfe5).
Patch coverage: 10.57% of modified lines in pull request are covered.

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Additional details and impacted files
@@            Coverage Diff             @@
##             main     #164      +/-   ##
==========================================
- Coverage   32.61%   30.65%   -1.97%     
==========================================
  Files          60       66       +6     
  Lines        2287     2512     +225     
==========================================
+ Hits          746      770      +24     
- Misses       1541     1742     +201     
Impacted Files Coverage Δ
steinbock/_cli/_cli.py 0.00% <0.00%> (ø)
steinbock/_cli/apps.py 0.00% <0.00%> (ø)
steinbock/_cli/utils.py 0.00% <ø> (ø)
steinbock/_cli/visualization.py 0.00% <0.00%> (ø)
steinbock/classification/_cli/ilastik.py 0.00% <0.00%> (ø)
steinbock/export/_cli/_cli.py 0.00% <0.00%> (ø)
steinbock/export/_cli/data.py 0.00% <0.00%> (ø)
steinbock/export/data.py 74.35% <0.00%> (ø)
steinbock/export/graphs.py 90.62% <0.00%> (ø)
steinbock/measurement/_cli/cellprofiler.py 0.00% <0.00%> (ø)
... and 24 more

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@jwindhager jwindhager marked this pull request as ready for review February 3, 2023 16:06
@jwindhager jwindhager merged commit 049d209 into main Feb 3, 2023
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2 participants