update tests and example data reference

BorchLab · Aug 5, 2024 · 98affcc · 98affcc
1 parent 8280455
commit 98affcc
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/tests/testthat/test-formatGenes.R b/tests/testthat/test-formatGenes.R
@@ -1,7 +1,7 @@
 # test script for formatGenes.R - testcases are NOT comprehensive!
 
 test_that("formatGenes works", {
-  data(apex_example.data)
+  data(immapex_example.data)
   formatGenes_TenX <- formatGenes(immapex_example.data[["TenX"]],
                                     region = "v",
                                     technology = "TenX") 

diff --git a/tests/testthat/test-inferCDR.R b/tests/testthat/test-inferCDR.R
@@ -2,7 +2,7 @@
 
 test_that("inferCDR works", {
 
-  data(apex_example.data)
+  data(immapex_example.data)
   reference <- getdata("getIMGT", "getIMGT_TRBV_human_inframe_aa")
 
   TenX_formatted <- formatGenes(immapex_example.data[["TenX"]],

diff --git a/tests/testthat/testdata/getIMGT/getIMGT_TRAJ_mouse_inframe_aa.rds b/tests/testthat/testdata/getIMGT/getIMGT_TRAJ_mouse_inframe_aa.rds