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Capra Lab

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  1. lab-manuscript-template lab-manuscript-template Public

    An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)

    TeX 20 2

  2. cosmis cosmis Public

    COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3D mutational constraint on 6.1 amino …

    Python 17 5

  3. DiGePred DiGePred Public

    Forked from souhridm/DiGePred

    Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has been trained using digenic pairs from…

    Python 7

  4. pdbmap pdbmap Public

    Perl 2 1

  5. resources resources Public

    This directory includes useful tutorials and resources for working in the Capra lab.

    Jupyter Notebook 1

  6. VIPUR VIPUR Public

    Forked from EvanBaugh/VIPUR

    A method for identifying deleterious protein variation.

    C++ 1

Repositories

Showing 10 of 11 repositories
  • NEFL_Haplotype_Editing Public
    CapraLab/NEFL_Haplotype_Editing’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 9, 2025
  • CapraLab.github.io Public Forked from fraser-lab/fraser-lab.github.io

    Capra Lab website

    CapraLab/CapraLab.github.io’s past year of commit activity
    HTML 0 MIT 138 0 0 Updated Oct 25, 2024
  • pdbmap Public
    CapraLab/pdbmap’s past year of commit activity
    Perl 2 1 20 0 Updated Oct 22, 2024
  • lab-manuscript-template Public

    An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)

    CapraLab/lab-manuscript-template’s past year of commit activity
    TeX 20 MIT 2 0 0 Updated Nov 13, 2023
  • pipeline_download_scripts Public

    BASH scripts to download required files for the psbadmin and pdbmap code

    CapraLab/pipeline_download_scripts’s past year of commit activity
    Shell 0 0 1 0 Updated Mar 6, 2023
  • resources Public

    This directory includes useful tutorials and resources for working in the Capra lab.

    CapraLab/resources’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 5, 2023
  • cosmis Public

    COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3D mutational constraint on 6.1 amino acid sites covering >80% (16,533) of human proteins.

    CapraLab/cosmis’s past year of commit activity
    Python 17 GPL-3.0 5 0 0 Updated Nov 11, 2022
  • PSB Public Forked from souhridm/PSB

    Personalized Structural Biology approach for rare coding variant interpretation, based on protein structural context and MD simulations.

    CapraLab/PSB’s past year of commit activity
    Shell 0 1 0 0 Updated Jun 23, 2022
  • cosmis_app Public

    Dash based web application for interactive use of the COSMIS framework

    CapraLab/cosmis_app’s past year of commit activity
    Python 0 0 0 0 Updated Sep 28, 2021
  • DiGePred Public Forked from souhridm/DiGePred

    Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has been trained using digenic pairs from DIDA and non-digenic pairs from unaffected relatives of individuals with rare undiagnosed disease.

    CapraLab/DiGePred’s past year of commit activity
    Python 7 2 0 0 Updated Aug 19, 2021
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