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CellArchLab

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  1. MemBrain MemBrain Public

    Python 31 2

  2. cryoet-scripts cryoet-scripts Public

    Miscellaneous scripts for processing cryo-ET data

    Shell 12

  3. slabify-et slabify-et Public

    A CLI tool to segment the lamella slab in cryo-ET volumes

    Python 6 1

  4. relion5-scripts relion5-scripts Public

    Python 5

  5. membrain-pick membrain-pick Public

    Python 4 2

  6. napari-lasso-3d napari-lasso-3d Public

    Python 3 1

Repositories

Showing 10 of 11 repositories
  • chlamydataset2relion5 Public archive

    Python script to import pre-processed results from the Chlamy dataset (EMPIAR-11830) into Relion-5

    CellArchLab/chlamydataset2relion5’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Apr 25, 2025
  • membrain_tutorial_scripts Public
    CellArchLab/membrain_tutorial_scripts’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 24, 2025
  • membrain-stats Public
    CellArchLab/membrain-stats’s past year of commit activity
    Python 0 1 2 0 Updated Mar 19, 2025
  • membrain-pick Public
    CellArchLab/membrain-pick’s past year of commit activity
    Python 4 2 6 0 Updated Mar 18, 2025
  • cryoet-scripts Public

    Miscellaneous scripts for processing cryo-ET data

    CellArchLab/cryoet-scripts’s past year of commit activity
    Shell 12 0 0 0 Updated Feb 25, 2025
  • MemBrain-v2 Public

    This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.

    CellArchLab/MemBrain-v2’s past year of commit activity
    Shell 1 0 1 0 Updated Jan 29, 2025
  • stopgap-addons Public

    A set of add-ons for enhancing the STOPGAP experience.

    CellArchLab/stopgap-addons’s past year of commit activity
    Shell 2 0 0 0 Updated Jan 21, 2025
  • napari-lasso-3d Public
    CellArchLab/napari-lasso-3d’s past year of commit activity
    Python 3 BSD-3-Clause 1 6 0 Updated Jan 9, 2025
  • slabify-et Public

    A CLI tool to segment the lamella slab in cryo-ET volumes

    CellArchLab/slabify-et’s past year of commit activity
    Python 6 BSD-3-Clause 1 2 0 Updated Oct 21, 2024
  • relion5-scripts Public
    CellArchLab/relion5-scripts’s past year of commit activity
    Python 5 BSD-3-Clause 0 0 0 Updated Sep 9, 2024
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