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CholGen

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  1. sequencing-resources sequencing-resources Public

  2. linux-learning linux-learning Public

    Shell

  3. bacpage bacpage Public

    Forked from watronfire/Eureka

    Snakemake pipeline for analysis of pathogen genomes. Will be pathogen-agnostic in the future but is currently designed for *Vibrio Cholerae*

    Python 7

Repositories

Showing 7 of 7 repositories
  • Vibecheck Public

    An easy-to-use program to assign O1 Vibrio cholerae genomes to canonical lineages using phylogenetic placement.

    CholGen/Vibecheck’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 0 3 0 Updated Feb 24, 2025
  • bacpage Public Forked from watronfire/Eureka

    Snakemake pipeline for analysis of pathogen genomes. Will be pathogen-agnostic in the future but is currently designed for *Vibrio Cholerae*

    CholGen/bacpage’s past year of commit activity
    Python 7 GPL-3.0 1 3 0 Updated Feb 12, 2025
  • RegionalAnalysis-2024 Public
    CholGen/RegionalAnalysis-2024’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 15, 2024
  • sequencing-resources Public
    CholGen/sequencing-resources’s past year of commit activity
    0 0 0 0 Updated Aug 27, 2024
  • CholGen-Workshop-2024 Public

    Resources for the CholGen workshop in February 2024

    CholGen/CholGen-Workshop-2024’s past year of commit activity
    HTML 0 1 0 0 Updated Apr 12, 2024
  • cholgen.github.io Public
    CholGen/cholgen.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 10, 2024
  • linux-learning Public
    CholGen/linux-learning’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 18, 2023

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