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@ClavelLab

The Clavel lab

This is the official GitHub account for the research group of Prof. Thomas Clavel.

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  1. Protologger Protologger Public

    Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    Python

  2. maldipickr maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    R 2

  3. Benchmarking-shallow-Metagenomics Benchmarking-shallow-Metagenomics Public

    Forked from NicoleTreichel/Benchmarking-shallow-Metagenomics

    Shell

  4. MiMiC2 MiMiC2 Public

    Forked from thh32/MiMiC2

    A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

    Python

Repositories

Showing 10 of 15 repositories
  • github-repo-stats Public

    Statistics aggregation for Github repositories for NFDI4Microbiota KPI

    ClavelLab/github-repo-stats’s past year of commit activity
    0 1 0 0 Updated Apr 3, 2025
  • Benchmarking-shallow-Metagenomics Public Forked from NicoleTreichel/Benchmarking-shallow-Metagenomics
    ClavelLab/Benchmarking-shallow-Metagenomics’s past year of commit activity
    Shell 0 MIT 1 0 0 Updated Mar 31, 2025
  • Protologger Public Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    ClavelLab/Protologger’s past year of commit activity
    Python 0 3 0 0 Updated Mar 31, 2025
  • pocpbenchmark Public

    Nextflow workflow for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

    ClavelLab/pocpbenchmark’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 20, 2025
  • pocpbenchmark_manuscript Public

    Code and manuscript for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

    ClavelLab/pocpbenchmark_manuscript’s past year of commit activity
    TeX 0 GPL-3.0 0 0 0 Updated Mar 20, 2025
  • MiMiC2 Public Forked from thh32/MiMiC2

    A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

    ClavelLab/MiMiC2’s past year of commit activity
    Python 0 GPL-2.0 2 0 0 Updated Mar 18, 2025
  • genome-assembly Public

    A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

    ClavelLab/genome-assembly’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Mar 4, 2025
  • maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    ClavelLab/maldipickr’s past year of commit activity
    R 2 GPL-3.0 0 4 (1 issue needs help) 0 Updated Feb 21, 2025
  • consprot Public

    High-throughput delineation of bacterial genera

    ClavelLab/consprot’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 15, 2024
  • template-dereplication-workflow Public

    Workflow template to dereplicate and cherry-pick mass spectrometry spectra

    ClavelLab/template-dereplication-workflow’s past year of commit activity
    R 0 GPL-3.0 0 1 0 Updated Nov 14, 2024
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