The program can be run in any environment that has: samtools, pandas and an Excel writer (openpyxl) if a sumamry excel file of the html information is needed.

The environment yaml can set up the environment for you, to create it you can simply run: conda env create -f environment.yaml

then install the program with pip install . (Make sure your in the setup directory)

To run: - more information to come, but the run command is VCFViz - Run options will be elaborated on in the future