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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 109 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 100 24

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 98 30

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 78 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 57 11

  6. picai_labels picai_labels Public

    Annotations for the PI-CAI Challenge: Public Training and Development Dataset

    57 25

Repositories

Showing 10 of 190 repositories
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 75 26 (1 issue needs help) 4 Updated Mar 28, 2025
  • dragon_eval Public

    Evaluation method for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_eval’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Mar 28, 2025
  • dragon_baseline Public

    Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_baseline’s past year of commit activity
    Python 2 Apache-2.0 1 0 0 Updated Mar 28, 2025
  • DIAGNijmegen/dragon_submission_llm_extractinator_mistral-nemo’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 28, 2025
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 3 0 0 Updated Mar 27, 2025
  • picai_prep Public

    Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.

    DIAGNijmegen/picai_prep’s past year of commit activity
    Python 21 Apache-2.0 6 0 0 Updated Mar 26, 2025
  • llm_extractinator Public

    This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.

    DIAGNijmegen/llm_extractinator’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 26, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Mar 25, 2025
  • DIAGNijmegen/dragon_submission_llm_extractinator_deepseek-r1’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 22, 2025
  • DIAGNijmegen/LEOPARD-challenge-baseline’s past year of commit activity
    Python 1 0 0 0 Updated Mar 21, 2025

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