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Update the documentation for release/changes #567

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FastSurfer has gained several new features since the last release but some features still need good or cleaned documentation.

This specifically includes

  • the --tal_reg flag to run_fastsurfer.sh
  • hypothal options in doc/overview/FLAGS.md

@dkuegler dkuegler force-pushed the feature/doc-update branch 5 times, most recently from e2ab45d to 1e12730 Compare September 4, 2024 16:36
@dkuegler dkuegler force-pushed the feature/doc-update branch 3 times, most recently from 7afd182 to e27fd42 Compare January 7, 2025 17:00
@dkuegler dkuegler force-pushed the feature/doc-update branch 2 times, most recently from b8caf3b to d14f154 Compare January 30, 2025 17:24
- slurm-help: does not change between different runs (on github actions)
- most documentation files
Add FASTSURFER_VERSION as a substitution ({{ FASTSURFER_VERSION }})

Update docs to use same path inside container as outside

image does not need to be pulled if docker, docker does that automatically
Remove (outdated) manual edits description from recon_surf/README.md (but reference doc/overview/EDITING.md)
… (shell scripts define the PYTHONPATH as well)
@dkuegler dkuegler force-pushed the feature/doc-update branch 2 times, most recently from 58da651 to 9ca9cff Compare February 3, 2025 17:27
@dkuegler dkuegler closed this Feb 4, 2025
@dkuegler dkuegler deleted the feature/doc-update branch February 4, 2025 10:40
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