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user-guide/python/index.html

@@ -1309,7 +1309,7 @@ <h2 id="mpi4py-for-cpu">mpi4py for CPU</h2>
 <div class="highlight"><pre><span></span><code><span class="ch">#!/usr/bin/env python</span>
 
 <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">Parallel Numpy Array Broadcast </span>
+<span class="sd">Parallel Numpy Array Broadcast</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
 <span class="kn">from</span> <span class="nn">mpi4py</span> <span class="kn">import</span> <span class="n">MPI</span>
@@ -1396,7 +1396,7 @@ <h2 id="mpi4py-for-gpu">mpi4py for GPU</h2>
 <div class="highlight"><pre><span></span><code><span class="ch">#!/usr/bin/env python</span>
 
 <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">Reduce-to-all CuPy Arrays </span>
+<span class="sd">Reduce-to-all CuPy Arrays</span>
 <span class="sd">&quot;&quot;&quot;</span>
 
 <span class="kn">from</span> <span class="nn">mpi4py</span> <span class="kn">import</span> <span class="n">MPI</span>
@@ -1491,7 +1491,7 @@ <h2 id="installing-your-own-python-packages-with-pip">Installing your own Python
 <div class="admonition tip">
 <p class="admonition-title">Tip</p>
 <p>In the commands below, remember to replace <code>x01</code> with your project code
-and <code>auser</code> with your username. </p>
+and <code>auser</code> with your username.</p>
 </div>
 <p>Next, create the virtual environment within a designated folder:</p>
 <div class="highlight"><pre><span></span><code>python<span class="w"> </span>-m<span class="w"> </span>venv<span class="w"> </span>--system-site-packages<span class="w"> </span>/work/x01/x01/auser/myvenv
@@ -1606,7 +1606,7 @@ <h2 id="installing-your-own-python-packages-with-conda">Installing your own Pyth
 <code>conda install -p ${CONDA_ROOT}/envs/myvenv &lt;package_name&gt;</code>. And you can
 see the packages currently installed in the active environment with the
 command <code>conda list</code>. After all packages have been installed, simply run
-<code>conda deactivate</code> twice in order to restore the original comand prompt.</p>
+<code>conda deactivate</code> twice in order to restore the original command prompt.</p>
 <div class="highlight"><pre><span></span><code><span class="o">(</span>myvenv<span class="o">)</span><span class="w"> </span><span class="o">[</span>auser@cirrus-login1<span class="w"> </span>auser<span class="o">]</span>$<span class="w"> </span>conda<span class="w"> </span>deactivate
 <span class="o">(</span>base<span class="o">)</span><span class="w"> </span><span class="o">[</span>auser@cirrus-login1<span class="w"> </span>auser<span class="o">]</span>$<span class="w"> </span>conda<span class="w"> </span>deactivate
 <span class="o">[</span>auser@cirrus-login1<span class="w"> </span>auser<span class="o">]</span>$
@@ -1666,7 +1666,10 @@ <h2 id="using-jupyterlab-on-cirrus">Using JupyterLab on Cirrus</h2>
     <code>module load anaconda3</code>.</p>
 </li>
 <li>
-<p>Run <code>export JUPYTER_RUNTIME_DIR=$(pwd)</code>.</p>
+<p>Run <code>export JUPYTER_RUNTIME_DIR=$(pwd)</code>. Jobs running in the
+    batch system may also need to set both <code>JUPYTER_CONFIG_DIR</code> and
+    <code>JUPYTER_DATA_DIR</code> is the same way. By default, these are related to
+    <code>${HOME}</code>, which is not available on the back end.</p>
 </li>
 <li>
 <p>Start the JupyterLab server by running