Merge pull request #85 from godotgildor/feature/support_numpy_2_1

Update to be compatible with numpy 2.1
Edinburgh-Genome-Foundry · Aug 29, 2024 · f200677 · f200677
2 parents c4d3ec1 + efa9b3a
commit f200677
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/dnachisel/builtin_specifications/EnforceGCContent.py b/dnachisel/builtin_specifications/EnforceGCContent.py
@@ -100,8 +100,10 @@ def evaluate(self, problem):
         wstart, wend = self.location.start, self.location.end
         sequence = self.location.extract_sequence(problem.sequence)
         gc = gc_content(sequence, window_size=self.window)
-        breaches = np.maximum(0, self.mini - gc) + np.maximum(
-            0, gc - self.maxi
+        breaches = np.atleast_1d(
+            np.maximum(0, self.mini - gc) + np.maximum(
+                0, gc - self.maxi
+            )
         )
         score = -breaches.sum()
         breaches_starts = wstart + (breaches > 0).nonzero()[0]