fix a typo in orientation flag for resample

FCP-INDI · Oct 1, 2024 · 336a2e6 · 336a2e6
1 parent cf600c1
commit 336a2e6
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Showing 2 changed files with 4 additions and 15 deletions.
diff --git a/CPAC/anat_preproc/anat_preproc.py b/CPAC/anat_preproc/anat_preproc.py
@@ -2251,21 +2251,10 @@ def anatomical_init_T2(wf, cfg, strat_pool, pipe_num, opt=None):
     node, out = strat_pool.get_data("T2w")
     wf.connect(node, out, T2_deoblique, "in_file")
 
-    T2_reorient = pe.Node(
-        interface=afni.Resample(),
-        name=f"T2_reorient_{pipe_num}",
-        mem_gb=0,
-        mem_x=(0.0115, "in_file", "t"),
-    )
-    T2_reorient.inputs.orientation = "RPI"
-    T2_reorient.inputs.outputtype = "NIFTI_GZ"
-
-    wf.connect(T2_deoblique, "out_file", T2_reorient, "in_file")
-
     outputs = {
-        "desc-preproc_T2w": (T2_reorient, "out_file"),
-        "desc-reorient_T2w": (T2_reorient, "out_file"),
-        "desc-head_T2w": (T2_reorient, "out_file"),
+        "desc-preproc_T2w": (T2_deoblique, "out_file"),
+        "desc-reorient_T2w": (T2_deoblique, "out_file"),
+        "desc-head_T2w": (T2_deoblique, "out_file"),
     }
 
     return (wf, outputs)

diff --git a/CPAC/utils/datasource.py b/CPAC/utils/datasource.py
@@ -1203,7 +1203,7 @@ def resolve_resolution(orientation, resolution, template, template_name, tag=Non
         resample.inputs.resample_mode = "Cu"
         resample.inputs.in_file = local_path
         resample.base_dir = "."
-        resample.orientation = orientation
+        resample.inputs.orientation = orientation
 
         resampled_template = resample.run()
         local_path = resampled_template.outputs.out_file