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updated the changelog
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birajstha committed Oct 2, 2024
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -20,10 +20,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

- `pyproject.toml` file with `[build-system]` defined.
- [![pre-commit.ci status](https://results.pre-commit.ci/badge/github/FCP-INDI/C-PAC/main.svg)](https://results.pre-commit.ci/latest/github/FCP-INDI/C-PAC/main) badge to [`README`](./README.md).
- `desired_orientation` key in the blank config under `pipeline_setup`.
- Workflow (`wf`) parameter in input and output of `ingress_pipeconfig_paths` function, where a node to reorient templates is added to the `wf`

### Changed

- Moved `pygraphviz` from requirements to `graphviz` optional dependencies group.
- Fixed-orientation-parameter `RPI` in resolve_resolution `freesurfer_fs_brain_connector`, `anatomical_init_T1`, `anatomical_init_T2`, `func_reorient` to take in whatever is set in the config `desired_orientation` field.

### Fixed

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2 changes: 2 additions & 0 deletions CPAC/resources/tests/test_templates.py
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Expand Up @@ -24,6 +24,7 @@
from CPAC.pipeline.engine import ingress_pipeconfig_paths, ResourcePool
from CPAC.utils.configuration import Preconfiguration
from CPAC.utils.datasource import get_highest_local_res
import nipype.pipeline.engine as pe


@pytest.mark.parametrize("pipeline", ALL_PIPELINE_CONFIGS)
Expand All @@ -32,6 +33,7 @@ def test_packaged_path_exists(pipeline):
Check that all local templates are included in image at at
least one resolution.
"""
wf = pe.Workflow(name="test")
wf, rpool = ingress_pipeconfig_paths(
wf, Preconfiguration(pipeline), ResourcePool(), "pytest"
)
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