updating the orientation flag at other places where resolve_resolutio…

…n is being used
FCP-INDI · Oct 1, 2024 · 99a8d4c · 99a8d4c
1 parent 2a7225d
commit 99a8d4c
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 0 deletions.
diff --git a/CPAC/longitudinal_pipeline/longitudinal_workflow.py b/CPAC/longitudinal_pipeline/longitudinal_workflow.py
@@ -1204,6 +1204,7 @@ def func_longitudinal_template_wf(subject_id, strat_list, config):
         resampled_template.inputs.template = template
         resampled_template.inputs.template_name = template_name
         resampled_template.inputs.tag = tag
+        resampled_template.inputs.orientation = config['desired_orientation']
 
         strat_init.update_resource_pool(
             {template_name: (resampled_template, "resampled_template")}

diff --git a/CPAC/registration/tests/mocks.py b/CPAC/registration/tests/mocks.py
@@ -151,6 +151,7 @@ def configuration_strategy_mock(method="FSL"):
         resampled_template.inputs.template = template
         resampled_template.inputs.template_name = template_name
         resampled_template.inputs.tag = tag
+        resampled_template.inputs.orientation = "RPI"
 
         strat.update_resource_pool(
             {template_name: (resampled_template, "resampled_template")}

diff --git a/CPAC/utils/test_mocks.py b/CPAC/utils/test_mocks.py
@@ -235,6 +235,7 @@ def configuration_strategy_mock(method="FSL"):
         resampled_template.inputs.template = template
         resampled_template.inputs.template_name = template_name
         resampled_template.inputs.tag = tag
+        resampled_template.inputs.orientation = "RPI"
 
         strat.update_resource_pool(
             {template_name: (resampled_template, "resampled_template")}