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Compute strain abundance in a defined microbial community
Python 10 2
Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.
Nextflow 4 1
ninjamap pipeline in nextflow
Python 4 2
Blast tools using Nextflow on AWS Batch using database on a shared file system.
Nextflow 1
Hybrid assembly pipeline in nextflow
Shell 1
MiSeq 16S DADA2 pipeline in nextflow
Nextflow pipeline to build the ninja index for ninjaMap
Run basic AMRFinderPlus on a set of genomes
Sanger assembly and annotation pipeline
Use Bakta for speedy and consistent genome annotation