pypromicev1.5.0 #481
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize, edited] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| name: process_test | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| path: "main" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install wheel | |
| python3 -m pip install --upgrade setuptools | |
| cd $GITHUB_WORKSPACE/main | |
| pip install . | |
| - name: Clone AWS Level 0 data repo for testing | |
| env: | |
| GITLAB_TOKEN : ${{ secrets.GITLAB_TOKEN }} | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| git clone --depth 1 https://oauth2:${{ env.GITLAB_TOKEN }}@geusgitlab.geus.dk/glaciology-and-climate/promice/aws-l0.git | |
| - name: Run L0 to L2 processing | |
| env: | |
| TEST_STATION: KAN_U HUM | |
| shell: bash | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/out/ | |
| mkdir $GITHUB_WORKSPACE/out/L0toL2/ | |
| mkdir $GITHUB_WORKSPACE/data_issues | |
| for i in $(echo ${{ env.TEST_STATION }} | tr ' ' '\n'); do | |
| python3 $GITHUB_WORKSPACE/main/src/pypromice/process/get_l2.py -c $GITHUB_WORKSPACE/aws-l0/tx/config/$i.toml -i $GITHUB_WORKSPACE/aws-l0/tx --issues $GITHUB_WORKSPACE/data_issues -o $GITHUB_WORKSPACE/out/L0toL2/ --data_issues_path $GITHUB_WORKSPACE/data_issues | |
| done | |
| - name: Run L2 to L3 processing | |
| env: | |
| TEST_STATION: KAN_U HUM | |
| shell: bash | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/out/L2toL3/ | |
| for i in $(echo ${{ env.TEST_STATION }} | tr ' ' '\n'); do | |
| echo ${i}_hour.nc | |
| python3 $GITHUB_WORKSPACE/main/src/pypromice/process/get_l2tol3.py -c $GITHUB_WORKSPACE/aws-l0/metadata/station_configurations/ -i $GITHUB_WORKSPACE/out/L0toL2/${i}/${i}_hour.nc -o $GITHUB_WORKSPACE/out/L2toL3/ --data_issues_path $GITHUB_WORKSPACE/data_issues | |
| done | |
| - name: Upload test output | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: result | |
| path: out |