REGLE v0.2.0

A new release (v0.2.0) of the REGLE repo, including analysis replication code for the paper (https://doi.org/10.5281/zenodo.11522190).

REGLE v0.1.0

Release of the REGLE repo to create new DOI for the REGLE paper: https://doi.org/10.5281/zenodo.10946563

ML-based COPD v0.2.0

Updated revision including downstream analysis and figure generation notebooks.

Model checkpoints, full ML-based COPD GWAS summary statistics, and annotated hits, loci, and filtered GWAS results are bundled in the release.

ML-based VCDR v0.1.0

Release of the ML-based VCDR repo used to create https://doi.org/10.1016/j.ajhg.2021.05.004 .

ML-based COPD v0.1.0

This is the initial release of ML-based COPD, corresponding to the initial preprint: https://www.medrxiv.org/content/10.1101/2022.09.12.22279863v1

v0.2.1 of DeepNull

Fixes issue with --model_config flag that occurs using older versions of the ml_collections library.

v0.2.0 of DeepNull

Post-manuscript revision release that incorporates XGBoost support into DeepNull.

v0.1.3 of DeepNull

This is the initial release of DeepNull, corresponding to the initial preprint: https://www.biorxiv.org/content/10.1101/2021.05.26.445783v1