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added morphology classification related schemas #199

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added morphology classification related schemas #199

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63 changes: 63 additions & 0 deletions .../main/resources/schemas/neurosciencegraph/morphology/morphologyclassification/v0.1.2.json
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{
"@context": [
"{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0",
{
"this": "{{base}}/schemas/neurosciencegraph/morphology/morphologyclassification/v0.1.2/shapes/"
}
],
"@type": "nxv:Schema",
"imports": [
"{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.4"
],
"shapes": [
{
"@id": "this:MorphologyClassificationShape",
"@type": "sh:NodeShape",
"label": "Morphology classification activity description.",
"nodeKind": "sh:BlankNodeOrIRI",
"targetClass": "nsg:MorphologyClassification",
"and": [
{
"node": "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.4/shapes/ActivityShape"
},
{
"property": [
{
"path": "prov:used",
"class": "nsg:ReconstructedCell",
"maxCount": 1,
"minCount": 1
},
{
"path": "prov:generated",
"or": [
{
"class": "nsg:MorphologyValidClassification"
},
{
"class": "nsg:MorphologyClassificationResult"
}
],
"maxCount": 1,
"minCount": 1
},
{
"path": "nsg:agent",
"node": "{{base}}/schemas/neurosciencegraph/core/agent/v0.1.0/shapes/AgentShape",
"maxCount": 1,
"minCount": 1
},
{
"path": "nsg:date",
"name": "Classification date",
"description": "Date when the classification was performed",
"datatype": "xsd:dateTime",
"maxCount": 1,
"minCount": 1
}
]
}
]
}
]
}
78 changes: 78 additions & 0 deletions ...resources/schemas/neurosciencegraph/morphology/morphologyclassificationresult/v0.1.2.json
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{
"@context": [
"{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0",
{
"this": "{{base}}/schemas/neurosciencegraph/morphology/morphologyclassificationresult/v0.1.2/shapes/"
}
],
"@type": "nxv:Schema",
"imports": [
"{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0",
"{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.2"
],
"shapes": [
{
"@id": "this:MorphologyClassificationResultShape",
"@type": "sh:NodeShape",
"label": "Morphology Classification Result",
"targetClass": "nsg:MorphologyClassificationResult",
"nodeKind": "sh:BlankNodeOrIRI",
"and": [
{
"node": "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0/shapes/EntityShape"
},
{
"property": [
{
"path": "nsg:body",
"name": "Morphology type",
"class": "nsg:MorphologyAnnotation",
"description": "The morphology type of the reconstructed cell.",
"editorialNote": "Need the cell type for class restriction.",
"node": "this:MorphologyAnnotationShape",
"maxCount": 1,
"minCount": 1
},
{
"path": "nsg:target",
"class": "nsg:ReconstructedCell",
"maxCount": 1,
"minCount": 1
},
{
"path": "rdfs:comment",
"name": "Classification Justification",
"description": "Justification of the decision of cell classification",
"datatype": "xsd:string",
"maxCount": 1
}
]
}
]
},
{"@id": "this:MorphologyAnnotationShape",
"@type": "sh:NodeShape",
"and": [
{
"property": [
{
"path": "nsg:mTypeAnnotation",
"name": "",
"description": "",
"node": "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.2/shapes/MorphologicalCellTypeOntologyTermShape",
"maxCount": 1,
"minCount": 1
},
{
"path": "nsg:brainLocation",
"description": "Brain Location (brain region, position In Layer, longitudinalAxis) of the reconstructed cell soma.",
"name": "Soma brain location",
"node": "{{base}}/schemas/neurosciencegraph/commons/brainlocation/v0.1.1/shapes/BrainLocationShape",
"maxCount": 1
}
]
}
]
}
]
}
89 changes: 89 additions & 0 deletions ...esources/schemas/neurosciencegraph/morphology/morphologyspatialanalysisresult/v0.1.2.json
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{
"@context": [
"{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0",
{
"this": "{{base}}/schemas/neurosciencegraph/morphology/morphologyspatialanalysisresult/v0.1.2/shapes/"
}
],
"@type": "nxv:Schema",
"imports": [
"{{base}}/schemas/neurosciencegraph/morphology/reconstructedcell/v0.1.2"
],
"shapes": [
{
"@id": "this:MorphologySpatialAnalysisResultShape",
"@type": "sh:NodeShape",
"label": "Morphology Spatial Analysis Result",
"nodeKind": "sh:BlankNodeOrIRI",
"targetClass": "nsg:MorphologySpatialAnalysisResult",
"and": [
{
"node": "{{base}}/schemas/neurosciencegraph/commons/entity/v0.1.0/shapes/EntityShape"
},
{
"property": [
{
"path": "nsg:axonTerminal",
"description": "Axon terminal of the reconstructed cell.",
"name": "Axon terminal",
"node": "this:AxonTerminalShape"
},
{
"path": "nsg:somaLocation",
"name": "Soma brain location",
"description": "Brain Location (brain region, position In Layer, longitudinalAxis) of the reconstructed cell soma.",
"node": "this:brainLocationShape",
"maxCount": 1,
"minCount": 1
}
]
}
]
},
{
"@id": "this:BrainLocationShape",
"@type": "sh:NodeShape",
"and": [
{
"node": "{{base}}/schemas/neurosciencegraph/commons/brainLocation/v0.1.2/shapes/BrainLocationShape"
},
{
"property": [
{
"path": "nsg:hemisphere",
"description": "The hemisphere of the soma",
"name": "Soma hemisphere",
"sh:in": [
"Left",
"Right"
],
"maxCount": 1,
"minCount": 1
}
]
}
]
},
{
"@id": "this:AxonTerminalShape",
"@type": "sh:NodeShape",
"and": [
{
"node": "this:brainLocationShape"
},
{
"property": [
{
"path": "nsg:axonTerminalPercentage",
"name": "Axon terminal percentage",
"description": "The percentage of the axon terminal number in this brain region",
"datatype": "xsd:float",
"maxCount": 1,
"minCount": 1
}
]
}
]
}
]
}
26 changes: 26 additions & 0 deletions .../resources/schemas/neurosciencegraph/morphology/morphologyvalidclassification/v0.1.2.json
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{
"@context": [
"{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0",
{
"this": "{{base}}/schemas/neurosciencegraph/morphology/morphologyvalidclassification/v0.1.2/shapes/"
}
],
"@type": "nxv:Schema",
"imports": [
"{{base}}/schemas/neurosciencegraph/morphology/morphologyclassificationresult/v0.1.2"
],
"shapes": [
{
"@id": "this:MorphologyValidClassificationResultShape",
"@type": "sh:NodeShape",
"label": "Morphology Classification Result",
"nodeKind": "sh:BlankNodeOrIRI",
"targetClass": "nsg:MorphologyValidClassification",
"and": [
{
"node": "{{base}}/schemas/neurosciencegraph/morphology/morphologyclassificationresult/v0.1.2/shapes/MorphologyClassificationResultShape"
}
]
}
]
}