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Update contamination.py
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KennthShang committed Nov 19, 2024
1 parent 96e0984 commit 8c13e21
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/phabox2/contamination.py
Original file line number Diff line number Diff line change
Expand Up @@ -142,7 +142,7 @@ def run(inputs):
# Prepare file headers
contamination_header = "Accession\tLength\tTotal_genes\tViral_genes\tProkaryotic_genes\tKmer_freq\tContamination\tProvirus\tPure_viral\n"
candidate_prophage_header = "Accession\tLength\tTotal_genes\tViral_genes\tProkaryotic_genes\tProvirus\tContamination\tProviral_length\tProkaryotic_length\tRegion_types\tRegion_lengths\tRegion_coords_bp\tRegion_coords_genes\tRegion_viral_genes\tRegion_prokaryotic_genes\n"
gene_annotation_header = "Accession\tGene_num\tStart\tEnd\tStrand\tGC\tmarker_label\tmarker_name\tEvalue\tmarker_name\n"
gene_annotation_header = "Accession\tGene_num\tStart\tEnd\tStrand\tGC\tmarker_label\tdomain_name\tEvalue\tmarker_name\n"

records = []
label = {1:"viral", -1: "microbial", 0: "No match"}
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