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root_tagging_gui

This package is used to quickly tag features in images of roots. It can be used to measure angles and heights for any number of features, but it is currently set up to only measure several. It outputs a .csv with the measurements and the GUI parses each image.

The RootTaggingGUI was used in a publication: Hostetler AN, Erndwein L, Reneau JW, Stager A, Tanner HG, Cook DD and Sparks EE. “Multiple brace root phenotypes promote anchorage and limit root lodging in maize” PCE, 2022. https://doi.org/10.1111/pce.14289

A user video can be found on our lab YouTube Channel: https://youtu.be/kbDPeC8ewCQ

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  • Python 95.9%
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  • Batchfile 1.7%