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M-Sabrina committed Jun 24, 2022
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Expand Up @@ -7,11 +7,13 @@ Preprint available at: https://www.biorxiv.org/content/10.1101/2022.04.28.489904
In the following, we provide instructions on how to set up a Python environment 'min_analysis' and install a package 'min_analysis_tools'. These tools can be used to perform analysis on Min protein surface pattern data.
The folder 'min_analysis_scripts' contains scripts that use the provided tools to perform analysis on single stacks or perform batch processing of all stacks within a given folder.

Further, this repository contains three notebooks:
This repository contains three main notebooks:
- DEMO_MinDE_global_analysis.ipynb: demonstration of global analysis
- DEMO_MinDE_local_analysis.ipynb: demonstration of local analysis
- Quickstart_Min_analysis.ipynb: quick analysis tool for single-stack Min pattern analysis

Further, a series of "Supplementary" notebooks, which provide accuracy tests and controls for the provided methods.

Jupyter notebooks can be accessed in the following binder:

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/M-Sabrina/MinDE_analysis_2022/HEAD)
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