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@MannLabs

Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 59 3

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 115 24

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 463 103

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 170 31

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 82 26

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 79 19

Repositories

Showing 10 of 43 repositories
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 38 Apache-2.0 2 31 (1 issue needs help) 6 Updated Feb 9, 2025
  • alpharaw Public

    An open-source Python package to unify raw MS data accession and storage.

    MannLabs/alpharaw’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 4 8 2 Updated Feb 6, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 59 Apache-2.0 3 19 7 Updated Feb 6, 2025
  • alphashared Public

    Shared non-production code for AlphaX packages

    MannLabs/alphashared’s past year of commit activity
    Python 1 Apache-2.0 0 0 2 Updated Feb 4, 2025
  • timsrust Public
    MannLabs/timsrust’s past year of commit activity
    Rust 25 Apache-2.0 11 2 1 Updated Feb 3, 2025
  • scPortrait-notebooks Public
    MannLabs/scPortrait-notebooks’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 1 Updated Jan 31, 2025
  • py-lmd Public

    Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and convert single-cell segmentation masks.

    MannLabs/py-lmd’s past year of commit activity
    Python 8 MIT 1 6 0 Updated Jan 31, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 35 Apache-2.0 10 10 9 Updated Jan 30, 2025
  • alphapeptstats Public

    Python Package for the downstream analysis of mass-spectrometry-based proteomics data

    MannLabs/alphapeptstats’s past year of commit activity
    Jupyter Notebook 64 Apache-2.0 15 21 10 Updated Jan 28, 2025
  • pydiaid Public

    An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.

    MannLabs/pydiaid’s past year of commit activity
    Jupyter Notebook 19 Apache-2.0 5 9 0 Updated Jan 28, 2025
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