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Multithreading does not work for isotope calculation #212

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machth opened this issue Jul 30, 2024 · 2 comments
Open

Multithreading does not work for isotope calculation #212

machth opened this issue Jul 30, 2024 · 2 comments
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@machth
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machth commented Jul 30, 2024

In development branch, running IsotopeGenerator fails for unknown modifications and new nomenclature with "_" instead of " " (e.g. @Any_N-term instead of @Any N-term), but it works if you set threads = 1.
therefore, some issue occur with multithreading, probably still using the original mod df tables (from main) and not the updated ones (from development).

@jalew188
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jalew188 commented Aug 5, 2024

Can you also provide the code and the logs?

@jalew188
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jalew188 commented Aug 7, 2024

If the PTM is added by yourself in the GUI or in a notebook, then it is not pickled due to spawn multiprocessing. @GeorgWa we should use multi-threading instead of multiprocessing.

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