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MasterCube/README.md
  • 👋 Hi, I’m @MasterCube
  • 👀 I’m active in Computational Biology, Bioinformatics, Biophysics, Biochemistry, Molecular Biology
  • 🌱 I learned how to use DEEP LEARNING architectures for Computational Biology projects
  • 💞️ I’m looking to collaborate on protein synthesis models like TASEP (Totally Asymmetric Simple Exclusion Process)
  • I am familiar with HPC, cluster computing, UNIX/Linux, SLURM, bash scripting. When a developer, I like Python and C++ and am currently learning Julia.
  • 📫 How to reach me? [email protected]

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  1. CeCI-Training-on-HPC-2024 CeCI-Training-on-HPC-2024 Public

    Directories and files of the training on Linux, Vim, Bash script, SLURM, GitHub, HPC, checkpointing, workflows, Python

    Shell

  2. deep-learning-project-cracking-the-genetic-code deep-learning-project-cracking-the-genetic-code Public

    Python 2

  3. Ribosomer-in-Javascript Ribosomer-in-Javascript Public

    Agent-based model of protein synthesis by a pool or ribosomes on an arbitrary transcriptome

    JavaScript

  4. Ribosomer-in-python Ribosomer-in-python Public

    Agent-based model of protein synthesis by a pool of ribosomes on an arbitrary set of transcripts. Simulation program to be run in a high performance computing (HPC) cluster. The code is designed to…

    Python