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Feature/bump covariance#123

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twsearle merged 48 commits intodevelopMetOffice/orca-jedi:developfrom feature/bump_covarianceMetOffice/orca-jedi:feature/bump_covarianceCopy head branch name to clipboardNov 20, 2024

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Commits on Jul 26, 2024

• Add 3DVar and error covariance toolbox (dirac test) main programs.

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• Add initial version of 3dvar and dirac ctest.

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• Add saber to citest.

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• Another attempt to fix CI test. Add state tofieldset test.

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Commits on Jul 29, 2024

• Fixes to yaml files. Dirac test working. 3DVar needs adjoint

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Commits on Jul 30, 2024

• Add interpolator increment apply and adjoint methods and add increment to

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Commits on Aug 22, 2024

• Merge branch 'develop' into feature/add_simple_dirac_3dvar

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Commits on Sep 13, 2024

• Initial attempt to implement an increment interpolator unit test.

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• Merge branch 'develop' into feature/add_simple_dirac_3dvar

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• Fixes to new interpolator unit tests.

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• interpolator adjoint deal with missing values.

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Commits on Sep 20, 2024

• Add some additional code to respect fillvalues.

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Commits on Sep 24, 2024

• Update ci container (#117)

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• Fix coding norms.

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• Merge branch 'develop' into feature/add_simple_dirac_3dvar

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• Tidying up.

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Commits on Sep 26, 2024

• Merge branch 'develop' into feature/add_simple_dirac_3dvar

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• Fix a merge error.

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Commits on Oct 2, 2024

• Apply suggestions from code review

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• Update copyrights.

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• Merge branch 'feature/add_simple_dirac_3dvar' of https://github.com/MetOffice/orca-jedi into feature/add_simple_dirac_3dvar

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• Add reference data for 3dvar and dirac application tests. Turn off

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• Update 3dvar 3dvar 3dvar minimizer to DRPCG as recommended.

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Commits on Oct 9, 2024

• Rename ice to sic to match other tests etc.

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Commits on Oct 15, 2024

• Add BUMP NICA grid calculation. Change to use BUMP background error

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• Add BUMP NICA grid calculation. Change to use BUMP background error

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• Merge branch 'feature/bump_covariance' of https://github.com/MetOffice/orca-jedi into feature/bump_covariance

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• Add BUMP NICA grid calculation. Change to use BUMP background error

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• Add BUMP NICA grid calculation. Change to use BUMP background error

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• Merge branch 'feature/bump_covariance' of https://github.com/MetOffice/orca-jedi into feature/bump_covariance

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• Remove old 3dvar yaml file.

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Commits on Oct 17, 2024

• Changes to allow increments to deal with fillvalues produced by BUMP.

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Commits on Oct 18, 2024

• Temporary fix to new atlas error about non-linear interpolation. Add

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Commits on Oct 19, 2024

• Make masking out duplicate points for bump more generic.

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Commits on Oct 23, 2024

• Merge branch 'develop' into feature/bump_covariance

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Commits on Oct 24, 2024

• Change bump settings to make test for setting up grid quicker. Attempt

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Commits on Oct 29, 2024

• Filter out all observations with missing values in the innovations. Temporary fix for "Adjoint interpolation only works for interpolation schemes that are linear" error in 3dvar.

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• Updates to fix atlas adjoint interpolation error message.

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Commits on Oct 30, 2024

• Add bump nicas test reference data. Add units tests. Tidy up

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Commits on Nov 1, 2024

• Add support for missing values to more increment methods.

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• Bug fix to missing value detection.

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Commits on Nov 6, 2024

• Add identity 3dvar test (old test). Add some halo exchanges when going

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• Change fill value.

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• Update fill value

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Commits on Nov 13, 2024

• Apply suggestions from code review

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• Changes in response to review. In particular removing the unneeded

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Commits on Nov 15, 2024

• Add a bit more info to comment about extra field area.

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Commits on Nov 20, 2024

• Add a description to the set_gmask (set geometry mask) optional parameter.

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