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@NICHD-BSPC

NIH/NICHD Bioinformatics and Scientific Programming Core

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  1. termseq-peaks termseq-peaks Public

    Peak-calling for term-seq data in bacteria

    Python 6 1

  2. r-setup r-setup Public

    Documentation and config files for setting up R

    Vim Script 3

  3. geo_prepper geo_prepper Public

    Tool to help prepare data for GEO submission

    Python 3 1

  4. documentation-template documentation-template Public

    Repository demonstrating how to deploy Sphinx documentation to GitHub Pages

    Python 3

  5. effort-log effort-log Public

    Dockerized Flask web app for lightweight project tracking

    Python 3

  6. chrom-name-mappings chrom-name-mappings Public

    Automated workflow for matching chromosome names between genome assemblies.

    Python

Repositories

Showing 10 of 22 repositories
  • branched-docs-demo Public

    Example of building HTML docs hosted on github.io with subdirectories for selected branches

    NICHD-BSPC/branched-docs-demo’s past year of commit activity
    0 MIT 0 0 0 Updated Apr 1, 2025
  • multiome-wf Public
    NICHD-BSPC/multiome-wf’s past year of commit activity
    Python 0 0 0 0 Updated Mar 28, 2025
  • thongdee-2025 Public

    Source code for Thongdee et al 2025, "Modulation of protein activity by small RNA base pairing internal to coding sequences"

    NICHD-BSPC/thongdee-2025’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 27, 2025
  • intro-rnaseq-hpc Public
    NICHD-BSPC/intro-rnaseq-hpc’s past year of commit activity
    HTML 0 0 3 0 Updated Mar 26, 2025
  • carnation Public

    Interactive shiny app for deeply exploring bulk RNA-Seq data

    NICHD-BSPC/carnation’s past year of commit activity
    R 0 0 0 0 Updated Mar 21, 2025
  • termseq-peaks Public

    Peak-calling for term-seq data in bacteria

    NICHD-BSPC/termseq-peaks’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Mar 16, 2025
  • docker-pilot Public

    Testing integration with GH Actions & quay.io

    NICHD-BSPC/docker-pilot’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 13, 2025
  • snakemake_profile Public Forked from NIH-HPC/snakemake_profile

    Minimal snakemake profile for biowulf cluster

    NICHD-BSPC/snakemake_profile’s past year of commit activity
    Python 0 2 0 0 Updated Jan 21, 2025
  • training Public

    Source code of https://nichd-bspc.github.io/training

    NICHD-BSPC/training’s past year of commit activity
    CSS 0 2 0 0 Updated Jan 9, 2025
  • chrom-name-mappings Public

    Automated workflow for matching chromosome names between genome assemblies.

    NICHD-BSPC/chrom-name-mappings’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 25, 2024
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