The MSFragger Score column is not in the 'Proteins' tab

[sciordia]

We have updated in PD v2.5.0.400 the MSFragger node to the latest version and the search with this search engine works perfectly but the column with the MSFragger Score for each protein does not appear in the table (nor is it hidden), it is simply not there.
On the other hand, the MSFragger Score in the 'Peptide Groups' and 'PSMs' tabs is there.

Could you please check it and fix it, please?.

Thank you very much,
Sergio

[huiyinc]

Hi Sergio, I am wondering if you can have the SequestHT or Percolator scores in the 'Proteins' table when performing SequestHT/Percolator searches? If yes, we might need to check why the MSFragger score is not present in the 'Proteins' table. Thanks. Best wishes, Huiyin Sergio Ciordia ***@***.***> 於 2024年4月13日 下午5:08 寫道：  We have updated in PD v2.5.0.400 the MSFragger node to the latest version and the search with this search engine works perfectly but the column with the MSFragger Score for each protein does not appear in the table (nor is it hidden), it is simply not there. On the other hand, the MSFragger Score in the 'Peptide Groups' and 'PSMs' tabs is there. Could you please check it and fix it, please?. Thank you very much, Sergio — Reply to this email directly, view it on GitHub <#37>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALAWWAYBHXKEJQQCHRPPFPTY5DYY3AVCNFSM6AAAAABGFJ2XPCVHI2DSMVQWIX3LMV43ASLTON2WKOZSGI2DCNBUGU4DINQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[sciordia]

We use 3 search engines with PD. And since the node update only the "Protein Scores" of Mascot and SequestTH are displayed but not those of MSFragger. The same happens if you only use MSFragger, the MSFragger Score column is not shown. With MSFragger 3.3, it was displayed perfectly and we have used it for several years with this version of PD.

[huiyinc]

Hi Sergio, Thanks for reporting the issue. I have checked the codes and have no idea why the MSFragger score isn't displayed in the 'Proteins' table. I will see what I can do and let you know as soon as I can. Thanks. Best, Huiyin Sergio Ciordia ***@***.***> 於 2024年4月15日 週一 下午1:41寫道：

…

We use 3 search engines with PD. And since the node update only the "Protein Scores" of Mascot and SequestTH are displayed but not those of MSFragger. The same happens if you only use MSFragger, the MSFragger Score column is not shown. With MSFragger 3.3, it was displayed perfectly and we have used it for several years with this version of PD. — Reply to this email directly, view it on GitHub <#37 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALAWWA4I3L2HMMI5GKVF7TTY5NSAZAVCNFSM6AAAAABGFJ2XPCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDANJVGM3TQMBZGU> . You are receiving this because you commented.Message ID: ***@***.***>

-- Hui-Yin Chang, 張彙音 Assistant Professor Department of Biomedical Sciences and Engineering National Central University, Taiwan