fix: Fix makim config and dependencies with poetry

.editorconfig

@@ -0,0 +1,25 @@
+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 2
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.py]
+indent_style = space
+indent_size = 4
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+["LICENSE"]
+insert_final_newline = true
+
+["Makefile"]
+indent_style = tab

.github/workflows/main.yaml

@@ -1,11 +1,10 @@
-
 name: main
 
 on:
   push:
-    branches: [ main ]
+    branches: [main]
   pull_request:
-    branches: [ main ]
+    branches: [main]
 
 jobs:
   check-branch:
@@ -36,26 +35,36 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-    - uses: actions/checkout@v3
-
-    - uses: conda-incubator/setup-miniconda@v3
-      with:
-        miniconda-version: "latest"
-        environment-file: conda/dev.yaml
-        channels: conda-forge,nodefaults
-        activate-environment: osl-web
-        auto-update-conda: true
-        conda-solver: libmamba
-
-    - name: Build the book
-      run: |
-        makim pages.build
-        echo "opensciencelabs.org" > build/CNAME
-
-    # Push the book's HTML to github-pages
-    - name: GitHub Pages action
-      uses: peaceiris/[email protected]
-      if: ${{ github.event_name == 'push' }}
-      with:
-        github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: ./build
+      - uses: actions/checkout@v3
+
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniconda-version: "latest"
+          environment-file: conda/dev.yaml
+          channels: conda-forge,nodefaults
+          activate-environment: osl-web
+          auto-update-conda: true
+          conda-solver: libmamba
+
+      - name: Install dependencies
+        run: |
+          poetry check
+          poetry install
+
+      - name: Linter
+        run: |
+          pre-commit install
+          pre-commit run --all-file
+
+      - name: Build the book
+        run: |
+          makim pages.build
+          echo "opensciencelabs.org" > build/CNAME
+
+      # Push the book's HTML to github-pages
+      - name: GitHub Pages action
+        uses: peaceiris/[email protected]
+        if: ${{ github.event_name == 'push' }}
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./build

.makim.yaml

@@ -1,10 +1,9 @@
-version: 1.0
 groups:
   pages:
     tasks:
       pre-build:
         help: pre-build step
-        shell: bash
+        backend: bash
         run: |
           mkdir -p build
           # Directory to search for .ipynb files
@@ -23,12 +22,14 @@ groups:
 
       build:
         help: build the static page
-        dependencies:
-          - task: pages.pre-build
+        hooks:
+          pre-run:
+            - task: pages.pre-build
         run: mkdocs build --verbose --clean
 
       preview:
         help: preview the web page dynamically
-        dependencies:
-          - task: pages.pre-build
+        hooks:
+          pre-run:
+            - task: pages.pre-build
         run: mkdocs serve --watch pages --watch theme

.pre-commit-config.yaml

@@ -0,0 +1,24 @@
+default_stages:
+  - pre-commit
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: trailing-whitespace
+        exclude: "pages/blog"
+      - id: end-of-file-fixer
+        exclude: "pages/blog"
+      - id: check-json
+      - id: check-toml
+      - id: check-xml
+      - id: check-builtin-literals
+      - id: check-case-conflict
+      - id: check-docstring-first
+      - id: detect-private-key
+        exclude: "theme"
+
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: "v3.0.2"
+    hooks:
+      - id: prettier
+        exclude: "pages/blog|theme"

.prettierignore

@@ -0,0 +1 @@
+docs/changelog.md

.prettierrc.yaml

@@ -0,0 +1,6 @@
+overrides:
+  - files: "*.md"
+    options:
+      parser: remark
+      proseWrap: always
+      printWidth: 80

CODE_OF_CONDUCT.md

@@ -6,8 +6,8 @@ We as members, contributors, and leaders pledge to make participation in our
 community a harassment-free experience for everyone, regardless of age, body
 size, visible or invisible disability, ethnicity, sex characteristics, gender
 identity and expression, level of experience, education, socio-economic status,
-nationality, personal appearance, race, religion, or sexual identity
-and orientation.
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
 
 We pledge to act and interact in ways that contribute to an open, welcoming,
 diverse, inclusive, and healthy community.
@@ -17,23 +17,23 @@ diverse, inclusive, and healthy community.
 Examples of behavior that contributes to a positive environment for our
 community include:
 
-* Demonstrating empathy and kindness toward other people
-* Being respectful of differing opinions, viewpoints, and experiences
-* Giving and gracefully accepting constructive feedback
-* Accepting responsibility and apologizing to those affected by our mistakes,
+- Demonstrating empathy and kindness toward other people
+- Being respectful of differing opinions, viewpoints, and experiences
+- Giving and gracefully accepting constructive feedback
+- Accepting responsibility and apologizing to those affected by our mistakes,
   and learning from the experience
-* Focusing on what is best not just for us as individuals, but for the
-  overall community
+- Focusing on what is best not just for us as individuals, but for the overall
+  community
 
 Examples of unacceptable behavior include:
 
-* The use of sexualized language or imagery, and sexual attention or
-  advances of any kind
-* Trolling, insulting or derogatory comments, and personal or political attacks
-* Public or private harassment
-* Publishing others' private information, such as a physical or email
-  address, without their explicit permission
-* Other conduct which could reasonably be considered inappropriate in a
+- The use of sexualized language or imagery, and sexual attention or advances of
+  any kind
+- Trolling, insulting or derogatory comments, and personal or political attacks
+- Public or private harassment
+- Publishing others' private information, such as a physical or email address,
+  without their explicit permission
+- Other conduct which could reasonably be considered inappropriate in a
   professional setting
 
 ## Enforcement Responsibilities
@@ -60,8 +60,8 @@ representative at an online or offline event.
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
 reported to the community leaders responsible for enforcement at
-[email protected].
-All complaints will be reviewed and investigated promptly and fairly.
+[email protected]. All complaints will be reviewed and investigated
+promptly and fairly.
 
 All community leaders are obligated to respect the privacy and security of the
 reporter of any incident.
@@ -82,15 +82,15 @@ behavior was inappropriate. A public apology may be requested.
 
 ### 2. Warning
 
-**Community Impact**: A violation through a single incident or series
-of actions.
+**Community Impact**: A violation through a single incident or series of
+actions.
 
 **Consequence**: A warning with consequences for continued behavior. No
 interaction with the people involved, including unsolicited interaction with
 those enforcing the Code of Conduct, for a specified period of time. This
 includes avoiding interactions in community spaces as well as external channels
-like social media. Violating these terms may lead to a temporary or
-permanent ban.
+like social media. Violating these terms may lead to a temporary or permanent
+ban.
 
 ### 3. Temporary Ban
 
@@ -106,20 +106,20 @@ Violating these terms may lead to a permanent ban.
 ### 4. Permanent Ban
 
 **Community Impact**: Demonstrating a pattern of violation of community
-standards, including sustained inappropriate behavior,  harassment of an
+standards, including sustained inappropriate behavior, harassment of an
 individual, or aggression toward or disparagement of classes of individuals.
 
-**Consequence**: A permanent ban from any sort of public interaction within
-the community.
+**Consequence**: A permanent ban from any sort of public interaction within the
+community.
 
 ## Attribution
 
 This Code of Conduct is adapted from the [Contributor Covenant][homepage],
 version 2.0, available at
 https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
 
-Community Impact Guidelines were inspired by [Mozilla's code of conduct
-enforcement ladder](https://github.com/mozilla/diversity).
+Community Impact Guidelines were inspired by
+[Mozilla's code of conduct enforcement ladder](https://github.com/mozilla/diversity).
 
 [homepage]: https://www.contributor-covenant.org
 

LICENSE

@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2022, thegraphnetwork
+Copyright (c) 2022, Open Science Labs
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

README.md

@@ -12,9 +12,20 @@ cd opensciencelabs.github.io
 ```
 
 ```bash
-mamba env create -f conda/dev.yaml
+mamba env create -f conda/dev.yaml --yes
+conda activate osl-web
+poetry install
 ```
 
 ```bash
 makim pages.preview
 ```
+
+## Linter
+
+Ensure you have installed the pre-commit config locally:
+
+```bash
+# with your conda env active, run:
+$ pre-commit install
+```

conda/dev.yaml

@@ -5,12 +5,4 @@ channels:
 dependencies:
   - python <3.12
   - pip
-  - pip:
-    - pre-commit
-    - mkdocs ==1.4.2
-    - makim
-    - mkdocs-blogging-plugin
-    - mkdocs-rss-plugin <1.9.0
-    - jupyterlab
-    - nbconvert
-    - pymdown-extensions
+  - poetry