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@QI2lab

QI2 lab

Quantitative Imaging and Inference Lab

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  1. mcSIM mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    Python 55 13

  2. OPM OPM Public

    Control, reconstruction, and analysis code for oblique plane microscopy.

    Python 21 7

  3. localize-psf localize-psf Public

    Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

    Python 5 2

  4. merfish3d-analysis merfish3d-analysis Public

    3D MERFISH data processing

    Python 4 2

  5. I2K2022-SIM I2K2022-SIM Public

    I2K 2022 mcSIM tutorial

    Jupyter Notebook 6

  6. napari-mcsim napari-mcsim Public

    Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package

    Python 1

Repositories

Showing 10 of 26 repositories
  • mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    QI2lab/mcSIM’s past year of commit activity
    Python 55 GPL-3.0 13 0 0 Updated Nov 27, 2024
  • merfish3d-analysis Public

    3D MERFISH data processing

    QI2lab/merfish3d-analysis’s past year of commit activity
    Python 4 BSD-3-Clause 2 4 0 Updated Nov 22, 2024
  • navigate Public Forked from TheDeanLab/navigate

    navigate - open source light-sheet microscope controls

    QI2lab/navigate’s past year of commit activity
    Python 0 7 0 0 Updated Nov 18, 2024
  • napari-micromanager Public Forked from pymmcore-plus/napari-micromanager
    QI2lab/napari-micromanager’s past year of commit activity
    Python 0 BSD-3-Clause 21 0 0 Updated Sep 28, 2024
  • instanseg Public Forked from instanseg/instanseg
    QI2lab/instanseg’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 14 0 0 Updated Sep 10, 2024
  • rlgc Public Forked from jdmanton/rlgc

    Richardson-Lucy deconvolution with local stopping given by gradient consensus

    QI2lab/rlgc’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Sep 1, 2024
  • SPIM_model Public
    QI2lab/SPIM_model’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Aug 30, 2024
  • ray_trace_pb Public

    Simple ray tracing in Python

    QI2lab/ray_trace_pb’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 29, 2024
  • pycrofluidics Public Forked from WetenSchaap/pycrofluidics

    A Python module for controlling Elveflow microfluidic devices

    QI2lab/pycrofluidics’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Aug 8, 2024
  • OPM Public

    Control, reconstruction, and analysis code for oblique plane microscopy.

    QI2lab/OPM’s past year of commit activity
    Python 21 GPL-3.0 7 0 0 Updated Aug 4, 2024
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