Prepare 0.9.13 ... the other will come back

.zenodo.json

@@ -22,7 +22,7 @@
       "resource_type": "software"
     }
   ],
-  "version": "0.9.12",
+  "version": "0.9.13",
   "upload_type": "software",
   "keywords": ["Luminescence", "Luminescence dating", "Chronology", "Age models"],
   "publication_date": "2021-06-03",

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: Luminescence
 Type: Package
 Title: Comprehensive Luminescence Dating Data Analysis
-Version: 0.9.12
+Version: 0.9.13
 Date: 2021-06-03
 Author: Sebastian Kreutzer [aut, trl, cre, dtc] (<https://orcid.org/0000-0002-0734-2199>),
     Christoph Burow [aut, trl, dtc] (<https://orcid.org/0000-0002-5023-4046>),
@@ -35,7 +35,7 @@ Authors@R: c(
     person("Norbert", "Mercier", role = c("aut"), comment = c(ORCID = "0000-0002-6375-9108")),
     person("Rachel K.", "Smedley", role = c("ctb"), comment = c(ORCID = "0000-0001-7773-5193")),
     person("Claire", "Christophe", role = c("ctb")),
-    person("Antoine", "Zink", rol = c("ctb"), comment = c(ORCID = "0000-0001-7146-1101")),
+    person("Antoine", "Zink", role = c("ctb"), comment = c(ORCID = "0000-0001-7146-1101")),
     person("Julie", "Durcan", role = c("ctb"), comment = c(ORCID = "0000-0001-8724-8022")),
     person("Georgina E.", "King", role = c("ctb", "dtc"), comment = c(ORCID = "0000-0003-1059-8192")),
     person("Anne", "Philippe", role = c("aut"), comment = c(ORCID = "0000-0002-5331-5087")),

Luminescence.BuildResults/Luminescence_0.9.12-bibliography.bib → Luminescence.BuildResults/Luminescence_0.9.13-bibliography.bib

@@ -2,7 +2,7 @@ @Manual{
   title = {Luminescence: Comprehensive Luminescence Dating Data Analysis},
   author = {Sebastian Kreutzer and Christoph Burow and Michael Dietze and Margret C. Fuchs and Christoph Schmidt and Manfred Fischer and Johannes Friedrich and Norbert Mercier and Anne Philippe and Svenja Riedesel and Martin Autzen and Dirk Mittelstrass and Harrison J. Gray},
   year = {2021},
-  note = {R package version 0.9.12},
+  note = {R package version 0.9.13},
   url = {https://CRAN.R-project.org/package=Luminescence},
 }
 

NEWS.md

@@ -5,7 +5,7 @@
 
 <!-- NEWS.md was auto-generated by NEWS.Rmd. Please DO NOT edit by hand!-->
 
-## Changes in version 0.9.12 (2021-06-03)
+## Changes in version 0.9.13 (2021-06-03)
 
 ### New functions
 
@@ -73,7 +73,7 @@
 
 ## Changes in version 0.9.11 (2021-04-29)
 
-**This package version requires R (&gt;= 3.6.0).**
+**This package version requires R (>= 3.6.0).**
 
 ### New functions
 
@@ -102,13 +102,13 @@
 #### `plot_GrowthCurve()`
 
 -   The quality index for the comparison of the *D*<sub>*e*</sub> and
-    the *D*<sub>*e*</sub> estimated from the Monte-Carlo yielded &gt;
-    100% if `mode = 'extrapolation'`; spooky and fixed.
+    the *D*<sub>*e*</sub> estimated from the Monte-Carlo yielded > 100%
+    if `mode = 'extrapolation'`; spooky and fixed.
 -   The function caused a crash in `analyse_SAR.CWOSL()` for very small
     *D*<sub>*e*</sub> error values and returned a user unfriendly error
     message (`Error in temp.GC[, 2]/temp.GC[, 1]`). This was caused by
     an unintentional type conversion to a `character` for very small
-    values (\#103, thanks to @IMHarly for spotting).
+    values (#103, thanks to @IMHarly for spotting).
 -   Add support for the Lambert W dose-response curve fitting as
     suggested by Pagonis et al. (2020) (thanks to @vpagonis for
     developing the math)
@@ -220,15 +220,15 @@
 
 ### Internals
 
--   The automated tests now use consistently `testthat` &gt;= 3.0.0.
+-   The automated tests now use consistently `testthat` >= 3.0.0.
     Naturally this has no user visible effect, however, we found a
     couple of minor bugs while updating the tests.
 
 ## Changes in version 0.9.8 (2020-11-16)
 
 ### Important user affecting changes
 
--   The version requires R (&gt;= 3.5.0)
+-   The version requires R (>= 3.5.0)
 -   We removed a few of our vignettes from the package. They are now
     available on <https://r-luminescence.org/tutorials/>
 
@@ -296,11 +296,11 @@
     `Error in rep(rgb(0, 0, 0, 0.3), length(TIMESINCEIRR) - 5)` (thanks
     to Annette Kadereit for flagging this issue)
 -   The function now shows also the normalised log-values under the
-    time-scale (\#97)
+    time-scale (#97)
 -   As it turned out, `t_star` did not work if the input was produced by
-    `read_BIN2R()`; fixed along with (\#97)
+    `read_BIN2R()`; fixed along with (#97)
 -   `t_star` now can be a function, e.g., `function(x) x+100`, which
-    would add a constant value to all `TIMESINCEIRR` values (\#97).
+    would add a constant value to all `TIMESINCEIRR` values (#97).
 
 #### `analyse_IRSAR.RF()`
 
@@ -321,14 +321,14 @@
 -   The argument `norm` now supports the options `"max"` for a
     normalisation to the highest point (the default), `"min"` for a
     normalisation to the lowest point and `huot` for a normalisation
-    suggested by Sébastien Huot (\#87) via GitHub
+    suggested by Sébastien Huot (#87) via GitHub
 
 #### `plot_RLum.Analysis()`
 
 -   The argument `norm` now supports the options `"max"` for a
     normalisation to the highest point (the default), `"min"` for a
     normalisation to the lowest point and `huot` for a normalisation
-    suggested by Sébastien Huot (\#87) via GitHub. Please note that
+    suggested by Sébastien Huot (#87) via GitHub. Please note that
     `norm` only works if `combine = TRUE`.
 
 #### `report_RLum()`
@@ -375,12 +375,12 @@
 #### `plot_AbanicoPlot()`
 
 -   The plot now can handle negative values, fixed in combination with
-    \#88 (reported by Sébastien Huot)
+    #88 (reported by Sébastien Huot)
 
 #### `plot_RadialPlot()`
 
 -   Fix display problem when `log.z = FALSE` combined with negative
-    values (\#88, reported by Sébastien Huot)
+    values (#88, reported by Sébastien Huot)
 
 #### `read_BIN2R()`
 
@@ -448,7 +448,7 @@
     The input error values (2nd column in the data.frame) had been, for
     reasons we cannot recall anymore, divided by two leading to an
     improved visualisation of uncertainties. A big thank goes to Andrea
-    Junge (\#93) who made us aware of this bug.
+    Junge (#93) who made us aware of this bug.
 
 2.  **The way the x-axis channels from BIN/BINX-files are generated
     changed** So far, during the file import, minimum and maximum values
@@ -484,7 +484,7 @@ Non-used dependency to `'interp'` removed.
 #### `calc_CentralDose()`
 
 -   The function does not crash anymore with an odd error if `NA` values
-    are provided (\#82 reported by Sébastien Huot).
+    are provided (#82 reported by Sébastien Huot).
 -   The function gained a new argument `na.rm` which is set to `FALSE`
     by default.
 
@@ -497,29 +497,28 @@ Non-used dependency to `'interp'` removed.
 
 -   The final parameter estimates and their confidence intervals in the
     console output are now always reported in their absolute values,
-    independent of whether the logged or non-logged model was used (\#84
+    independent of whether the logged or non-logged model was used (#84
     suggested by Sébastien Huot). This is a purely cosmetic change, and
     no changes to the calculations were made.
 -   The values in the profile log-likelihood plots are now always given
     in their absolute values, independent of whether the logged or
-    non-logged model was used (\#84 suggested by Sébastien Huot). This
-    is a purely cosmetic change, and no changes to the calculations were
+    non-logged model was used (#84 suggested by Sébastien Huot). This is
+    a purely cosmetic change, and no changes to the calculations were
     made. The output object still returns the original profile objects
     with the logged values.
 -   Improved handling of values close to zero if `bootstrap = TRUE`
-    (\#91, reported by Andrea Junge).
+    (#91, reported by Andrea Junge).
 
 #### `plot_GrowthCurve()`
 
--   Remove rounding from numerical output values (\#81 suggested by
+-   Remove rounding from numerical output values (#81 suggested by
     Sébastien Huot); this affects all subsequent functions. However,
     terminal and graphical output do not change.
 
 #### Internals
 
 -   The package `data/datalist` file listing the example data shipped
-    with the package was not correct (\#85, CRAN comment); now
-    corrected.
+    with the package was not correct (#85, CRAN comment); now corrected.
 
 ## Changes in version 0.9.3 (2019-07-31)
 
@@ -573,7 +572,7 @@ Non-used dependency to `'interp'` removed.
 #### `calc_TLLxTxRatio()`
 
 -   The `LxTx.Error` is no longer negative, even if the subtraction lead
-    to negative count values (\#78, reported by Sébastien Huot)
+    to negative count values (#78, reported by Sébastien Huot)
 
 #### `calc_SourceDoseRate()`
 
@@ -626,24 +625,24 @@ Non-used dependency to `'interp'` removed.
 
 -   The file name `RisoeBINfileData-class.R` was changed to
     `Risoe.BINfileData-class.R` for consistency reasons, however, this
-    has no further visible effect (\#76, spotted by Sébastien Huot)
+    has no further visible effect (#76, spotted by Sébastien Huot)
 
 ## Changes in version 0.9.0.110 (2019-04-21)
 
 `'Luminescence'` 0.9.X releases will be the last versions supporting
-**R** &lt; 3.5.0.
+**R** \< 3.5.0.
 
-### Important R related changes (R &gt;= 3.6.0)
+### Important R related changes (R \>= 3.6.0)
 
 The behaviour of the base R function `sample()` was changed / corrected
 (see news on <https://www.r-project.org> for details). This function is
 used heavily within functions by `'Luminescence'` (e.g.,
 `plot_GrowthCurve()`). That being said, it means that old data
-re-analysed by `'Luminescence'` using R versions &gt;= 3.6.0 will not
-give the same results. Differences are small, however, they may
-significant. If you want to reproduce your data, we recommend to use one
-of our [Docker images](https://github.com/R-Lum/RLumDocker) which
-include the R version from the package release date.
+re-analysed by `'Luminescence'` using R versions \>= 3.6.0 will not give
+the same results. Differences are small, however, they may significant.
+If you want to reproduce your data, we recommend to use one of our
+[Docker images](https://github.com/R-Lum/RLumDocker) which include the R
+version from the package release date.
 
 ### New functions
 
@@ -712,7 +711,7 @@ include the R version from the package release date.
 
 -   The function now checks if rho (`rhop`) is a sensible non-zero
     positive value and, if otherwise, stops with a more meaningful error
-    message. (Issue \#74)
+    message. (Issue #74)
 -   Now the function is a little bit less talkative if extreme dataset
     are provided as input
 
@@ -724,8 +723,8 @@ include the R version from the package release date.
     provided), sometimes the found BIN/BINX-files were imported twice.
     The corresponding code was simplified to avoid such errors in future
 -   Sometimes the time stamp is invalid since it is missing a leading
-    `0`. For BINX-files &gt;= version 6 such timestamps now get
-    corrected during the import
+    `0`. For BINX-files >= version 6 such timestamps now get corrected
+    during the import
 
 #### `read_XSYG2R()`
 

cran-comments.md

@@ -1,6 +1,8 @@
 ## Release summary
 
-This version updates 0.9.11 on CRAN and fixes issues flagged by the CRAN team
+This version updates 0.9.11 on CRAN and fixes issues flagged by the CRAN team.
+This submission addresses a warning flagged for the submission 0.9.12.
+`partial argument match of 'rol' to 'role'`; fixed
 
 ## Addressed CRAN issues