use cam_cesm2_2_rel_09_slh in cesm3_0_beta02 (RPF)

.gitignore

@@ -1,17 +1,3 @@
-# Ignore externals
-chem_proc
-cime
-components
-manage_externals.log
-src/physics/carma/base
-src/physics/clubb
-src/physics/cosp2/src
-src/physics/silhs
-src/physics/pumas
-src/dynamics/fv3/atmos_cubed_sphere
-libraries/FMS
-src/atmos_phys
-
 # Ignore compiled python
 buildnmlc
 buildcppc
@@ -27,4 +13,6 @@ cime-tests.o*
 aux_cam_*.log
 test_driver_*.sh
 cam_test_summaries
+
+# Ignore python bytecode files
 *.pyc

.gitignore_orig

@@ -0,0 +1,30 @@
+# Ignore externals
+chem_proc
+cime
+components
+manage_externals.log
+src/physics/carma/base
+src/physics/clubb
+src/physics/cosp2/src
+src/physics/silhs
+src/physics/pumas
+src/dynamics/fv3/atmos_cubed_sphere
+libraries/FMS
+src/atmos_phys
+
+# Ignore compiled python
+buildnmlc
+buildcppc
+
+# Ignore editor temporaries and backups
+*~
+.#*
+\#*#
+*.swp
+
+# Ignore test output files
+cime-tests.o*
+aux_cam_*.log
+test_driver_*.sh
+cam_test_summaries
+*.pyc

.gitmodules

@@ -0,0 +1,205 @@
+[submodule "chem_proc"]
+	path = chem_proc
+	url = https://github.com/ESCOMP/CHEM_PREPROCESSOR.git
+        fxrequired = AlwaysRequired
+        fxtag = chem_proc5_0_04
+	fxDONOTUSEurl = https://github.com/ESCOMP/CHEM_PREPROCESSOR.git
+
+[submodule "carma"]
+	path = src/physics/carma/base
+	url = https://github.com/ESCOMP/CARMA_base.git
+        fxrequired = AlwaysRequired
+        fxtag = carma3_49
+        fxDONOTUSEurl = https://github.com/ESCOMP/CARMA_base.git
+
+[submodule "pumas"]
+	path = src/physics/pumas
+	url = https://github.com/ESCOMP/PUMAS
+        fxrequired = AlwaysRequired
+        fxtag = pumas_cam-release_v1.3
+        fxDONOTUSEurl = https://github.com/ESCOMP/PUMAS
+
+#[submodule "pumas-frozen"]
+#	path = src/physics/pumas-frozen
+#	url = https://github.com/ESCOMP/PUMAS
+#        fxrequired = AlwaysRequired
+#        fxtag = pumas_cam-release_v1.17_rename
+#        fxDONOTUSEurl = https://github.com/ESCOMP/PUMAS
+
+[submodule "ali_arms"]
+	path = src/physics/ali_arms
+	url = https://github.com/ESCOMP/ALI-ARMS
+        fxrequired = AlwaysRequired
+        fxtag = ALI_ARMS_v1.0.1
+        fxDONOTUSEurl = https://github.com/ESCOMP/ALI-ARMS
+
+[submodule "atmos_phys"]
+	path = src/atmos_phys
+	url = https://github.com/RafaPedroFernandez/atmospheric_physics
+        fxtag = version0_00_007_slh
+        fxrequired = AlwaysRequired
+	fxDONOTUSEurl = https://github.com/RafaPedroFernandez/atmospheric_physics
+
+[submodule "fv3"]
+	path = src/dynamics/fv3
+	url = https://github.com/ESCOMP/CAM_FV3_interface.git
+        fxrequired = AlwaysRequired
+        fxtag = fv3_cesm.04
+	fxDONOTUSEurl = https://github.com/ESCOMP/CAM_FV3_interface.git
+
+[submodule "geoschem"]
+	path = src/chemistry/geoschem/geoschem_src
+	url = https://github.com/geoschem/geos-chem.git
+        fxrequired = AlwaysRequired
+        fxtag = 14.1.2
+        fxDONOTUSEurl = https://github.com/geoschem/geos-chem.git
+
+[submodule "hemco"]
+	path = src/hemco
+	url = https://github.com/ESCOMP/HEMCO_CESM.git
+        fxtag = hemco-cesm1_2_1_hemco3_6_3_cesm_rme01
+        fxrequired = AlwaysRequired
+	fxDONOTUSEurl = https://github.com/ESCOMP/HEMCO_CESM.git
+
+[submodule "rte-rrtmgp"]
+	path = src/physics/rrtmgp/ext
+	url = https://github.com/earth-system-radiation/rte-rrtmgp.git
+        fxrequired = AlwaysRequired
+        fxtag = v1.7
+        fxDONOTUSEurl = https://github.com/earth-system-radiation/rte-rrtmgp.git
+
+[submodule "rrtmgp-data"]
+	path = src/physics/rrtmgp/data
+	url = https://github.com/earth-system-radiation/rrtmgp-data.git
+        fxrequired = AlwaysRequired
+        fxtag = v1.8
+        fxDONOTUSEurl = https://github.com/earth-system-radiation/rrtmgp-data.git
+
+[submodule "mpas"]
+	path = src/dynamics/mpas/dycore
+	url = https://github.com/MPAS-Dev/MPAS-Model.git
+        fxrequired = AlwaysRequired
+        fxsparse = ../.mpas_sparse_checkout
+        fxtag = b8c33daa
+	fxDONOTUSEurl = https://github.com/MPAS-Dev/MPAS-Model.git
+
+[submodule "cosp2"]
+	path = src/physics/cosp2/src
+	url = https://github.com/CFMIP/COSPv2.0
+        fxrequired = AlwaysRequired
+        fxsparse = ../.cosp_sparse_checkout
+        fxtag = v2.1.4cesm
+	fxDONOTUSEurl = https://github.com/CFMIP/COSPv2.0
+
+[submodule "clubb"]
+	path = src/physics/clubb
+	url = https://github.com/larson-group/clubb_release
+        fxrequired = AlwaysRequired
+        fxsparse = ../.clubb_sparse_checkout
+        fxtag = clubb_release_b76a124_20200220_c20200320
+        fxDONOTUSEurl = https://github.com/larson-group/clubb_release
+
+[submodule "silhs"]
+	path = src/physics/silhs
+	url = https://github.com/ESCOMP/SILHS_CESM
+        fxrequired = AlwaysRequired
+        fxtag = silhs_clubb_release_b76a124_20200220_c20200320
+        fxDONOTUSEurl = https://github.com/ESCOMP/SILHS_CESM
+
+[submodule "cism"]
+path = components/cism
+url = https://github.com/ESCOMP/CISM-wrapper
+fxtag = cism2_1_69_a
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/CISM-wrapper
+
+[submodule "rtm"]
+path = components/rtm
+url = https://github.com/ESCOMP/RTM
+fxtag = rtm1_0_80
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/RTM
+
+[submodule "mosart"]
+path = components/mosart
+url = https://github.com/ESCOMP/MOSART
+fxtag = mosart1_0_37_1
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/MOSART
+
+[submodule "mizuRoute"]
+path = components/mizuRoute
+url = https://github.com/ESCOMP/mizuRoute
+fxtag = cesm-coupling.n02_v2.1.3
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute
+
+[submodule "ccs_config"]
+path = ccs_config
+url = https://github.com/ESMCI/ccs_config_cesm.git
+fxtag = ccs_config_cesm1.0.0
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
+
+[submodule "cime"]
+path = cime
+url = https://github.com/ESMCI/cime
+fxtag = cime5.8.32.7
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESMCI/cime
+
+[submodule "cmeps"]
+path = components/cmeps
+url = https://github.com/ESCOMP/CMEPS.git
+# fxtag = cmeps1.0.2
+fxtag = cmeps1.0.6
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git
+# url = https://github.com/RafaPedroFernandez/CMEPS.git
+# # fxtag = cmeps1.0.2_slh
+# fxtag = cmeps1.0.2_slh
+# fxrequired = ToplevelRequired
+# fxDONOTUSEurl = https://github.com/RafaPedroFernandez/CMEPS.git
+
+[submodule "cdeps"]
+path = components/cdeps
+url = https://github.com/ESCOMP/CDEPS.git
+fxtag = cdeps1.0.43
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git
+
+[submodule "share"]
+path = share
+url = https://github.com/ESCOMP/CESM_share
+fxtag = share1.1.2
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share
+
+[submodule "parallelio"]
+path = libraries/parallelio
+url = https://github.com/NCAR/ParallelIO
+fxtag = pio2_6_2
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/NCAR/ParallelIO
+
+[submodule "cice"]
+path = components/cice
+url = https://github.com/ESCOMP/CESM_CICE
+fxtag = cesm_cice6_5_0_10
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/NCAR/ParallelIO
+
+[submodule "clm"]
+path = components/clm
+url = https://github.com/ESCOMP/CTSM
+fxtag = release-cesm2.2.03
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/CTSM
+
+[submodule "fms"]
+path = libraries/FMS
+url = https://github.com/ESCOMP/FMS_interface
+fxtag = fi_20200609_cesm2.2_231205
+fxrequired = ToplevelRequired
+fxDONOTUSEurl = https://github.com/ESCOMP/FMS_interface
+