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@RamanLab

Raman Lab, IIT Madras

Computational Systems Biology Lab @ IIT Madras

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  1. FastSL FastSL Public

    A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models

    MATLAB 7 7

  2. metquest metquest Public

    Forked from aarthi31/metquest-1

    Enumerating biosynthetic pathways in metabolic networks

    Jupyter Notebook 12 8

  3. ReactionMiner ReactionMiner Public

    Tool to predict (bio)chemical reactions using graph mining.

    C++ 22 10

  4. cobratoolbox cobratoolbox Public

    Forked from opencobra/cobratoolbox

    The COnstraint-Based Reconstruction and Analysis Toolbox

    MATLAB

  5. FastSL-py FastSL-py Public

    Python implementation of FastSL

    Python 1

Repositories

Showing 10 of 50 repositories
  • COSMOS Public

    Compares monocultures and cocultres in an identical environment to identify the optimal microbial system

    RamanLab/COSMOS’s past year of commit activity
    MATLAB 0 0 0 0 Updated Apr 2, 2025
  • UNFOLD-Framework Public
    RamanLab/UNFOLD-Framework’s past year of commit activity
    Python 0 0 0 0 Updated Mar 28, 2025
  • minMicrobiome Public

    Code for generation of Minimal Microbiomes using a constraint-based approach

    RamanLab/minMicrobiome’s past year of commit activity
    MATLAB 4 MIT 2 1 0 Updated Mar 23, 2025
  • BenchmCommDetection Public

    Contains the python module to implement community detection algos along with the final results obtained from benchmark analysis

    RamanLab/BenchmCommDetection’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 22, 2025
  • FastSL Public

    A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models

    RamanLab/FastSL’s past year of commit activity
    MATLAB 7 7 0 0 Updated Feb 8, 2025
  • metquest Public Forked from aarthi31/metquest-1

    Enumerating biosynthetic pathways in metabolic networks

    RamanLab/metquest’s past year of commit activity
    Jupyter Notebook 12 GPL-2.0 11 0 0 Updated Feb 5, 2025
  • TNBC-single-cell-markers Public

    Reproducible code for identifying TIL-based markers from single-cell RNA-seq data of TNBC patients

    RamanLab/TNBC-single-cell-markers’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 2, 2025
  • Neobacillus Public

    Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus

    RamanLab/Neobacillus’s past year of commit activity
    0 0 0 0 Updated Jan 25, 2025
  • CAMP Public
    RamanLab/CAMP’s past year of commit activity
    MATLAB 2 0 0 0 Updated Dec 3, 2024
  • fbc_curation_matlab Public

    fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.

    RamanLab/fbc_curation_matlab’s past year of commit activity
    MATLAB 2 LGPL-3.0 2 1 0 Updated Aug 29, 2024
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