issue #80 - add Ensembl 112

SACGF · Aug 3, 2024 · 6aa1db6 · 6aa1db6
1 parent 57a0a43
commit 6aa1db6
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/generate_transcript_data/ensembl_transcripts_grch38.sh b/generate_transcript_data/ensembl_transcripts_grch38.sh
@@ -25,7 +25,7 @@ fi
 
 #81 is first GFF3 for GRCh38
 merge_args=()
-for release in 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111; do
+for release in 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112; do
   # Switched to using GTFs as they contain protein version
   filename=Homo_sapiens.GRCh38.${release}.gff3.gz
   url=ftp://ftp.ensembl.org/pub/release-${release}/gff3/homo_sapiens/${filename}

diff --git a/generate_transcript_data/github_release_upload.sh b/generate_transcript_data/github_release_upload.sh
@@ -24,7 +24,7 @@ gh release upload ${CDOT_RELEASE_NAME} \
   ${CDOT_DATA_DIR}/ensembl/GRCh37/cdot-${CDOT_DATA_VERSION}.ensembl.Homo_sapiens.GRCh37.87.gff3.json.gz \
   ${CDOT_DATA_DIR}/ensembl/GRCh38/cdot-${CDOT_DATA_VERSION}.ensembl.grch38.json.gz \
   ${CDOT_DATA_DIR}/ensembl/GRCh38/cdot-${CDOT_DATA_VERSION}.ensembl.Homo_sapiens.GRCh38.110.gff3.json.gz \
-  ${CDOT_DATA_DIR}/ensembl/GRCh38/cdot-${CDOT_DATA_VERSION}.ensembl.Homo_sapiens.GRCh38.111.gff3.json.gz \
+  ${CDOT_DATA_DIR}/ensembl/GRCh38/cdot-${CDOT_DATA_VERSION}.ensembl.Homo_sapiens.GRCh38.112.gff3.json.gz \
   ${CDOT_DATA_DIR}/ensembl/T2T-CHM13v2.0/cdot-${CDOT_DATA_VERSION}.ensembl.T2T-CHM13v2.0.json.gz \
   ${CDOT_DATA_DIR}/refseq/GRCh37/cdot-${CDOT_DATA_VERSION}.refseq.grch37.json.gz \
   ${CDOT_DATA_DIR}/refseq/GRCh37/cdot-${CDOT_DATA_VERSION}.GCF_000001405.25_GRCh37.p13_genomic.105.20201022.gff.json.gz \

diff --git a/generate_transcript_data/json_schema_version.py b/generate_transcript_data/json_schema_version.py
@@ -1,3 +1,3 @@
 # After 0.2.22 we split version into separate code (pip) and data schema versions
 # The cdot client will use its own major/minor to determine whether it can read these data files
-JSON_SCHEMA_VERSION = "0.2.25"
+JSON_SCHEMA_VERSION = "0.2.26"