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1. gatkVariantCalling gatkVariantCalling Public

   Snakemake pipeline for variant calling using GATK

   Python 4 1

2. SomaticMutations SomaticMutations Public

   This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

   Python 3 2

3. StructureVariations StructureVariations Public

   Snakemake pipeline for detecting, annotating, filtering and visualising structure variations and gene fusions from WGS/WES.

   Python 3

4. ATAC-Seq ATAC-Seq Public

   Snakemake pipeline for ATAC-Seq

   Python

5. 2015-metagenome-assembly 2015-metagenome-assembly Public

   Makefile pipeline for metagenome assembly.

   TeX 2