A minimal Python library for parsing SPAdes FASTG files
Object oriented programming version of pyfastg (https://github.com/fedarko/pyfastg)
A demo and the validation is included in the pyfast-oop_demo.ipynb jupyter notebook
I tested using SPAdes assembly graphs from RNAseq data from m. musculus and c. elegans
Unfortunately, due to the file size limitation, I was only able to upload a compressed
version of the c. elegans assembly graph.
The object oriented approach of pyfastg-oop makes it easy to extend. I already added an additional reader for graphs from BCALM, allowing to convert .fa-files from BCALM to .fastg-files