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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 349 45

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 102 14

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 71 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 89 5

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 63 8

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 29 3

Repositories

Showing 10 of 66 repositories
  • snp2cell Public

    cell type specific, trait-associated gene regulation

    Teichlab/snp2cell’s past year of commit activity
    Python 21 BSD-3-Clause 0 0 0 Updated Mar 31, 2025
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 349 MIT 45 31 0 Updated Mar 25, 2025
  • cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Teichlab/cellhint’s past year of commit activity
    Python 102 MIT 14 6 0 Updated Mar 23, 2025
  • celcomen Public
    Teichlab/celcomen’s past year of commit activity
    Jupyter Notebook 10 0 0 0 Updated Mar 20, 2025
  • cell2tcr Public

    Inference of TCR motifs

    Teichlab/cell2tcr’s past year of commit activity
    Jupyter Notebook 29 3 2 0 Updated Mar 18, 2025
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 23 GPL-3.0 6 2 0 Updated Feb 13, 2025
  • limbcellatlas Public

    This repository contains codes used for the human fetal limb cell atlas.

    Teichlab/limbcellatlas’s past year of commit activity
    Jupyter Notebook 14 4 0 0 Updated Jan 28, 2025
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Teichlab/celltypist_wiki’s past year of commit activity
    Python 19 3 0 0 Updated Jan 9, 2025
  • drug2cell Public

    Gene group activity utility functions for Scanpy

    Teichlab/drug2cell’s past year of commit activity
    Jupyter Notebook 71 4 7 0 Updated Dec 21, 2024
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Jupyter Notebook 89 MIT 5 7 0 Updated Dec 11, 2024
View all repositories