Fix unit test and dependabot alert

CHANGELOG.md

@@ -9,12 +9,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## [1.5.1] - 2024-12-23
 
 ### Added
-- Error warmings incase no appointments are provided
+- Error warmings in case no appointments are provided
 - Added ssl-certificate fix in deploy script
-- Added expetion tests
+- Added unit tests for empty predictions
 
 ### Changed
 - Saving of predictions is now located in helper function
+- Updated requirements to solve dependabot alert
 
 ## [1.5.0] - 2024-12-10
 

pyproject.toml

@@ -31,6 +31,7 @@ dependencies =[
     "streamlit>=1.30",
     "tomli~=2.0",
     "relplot>=1.0",
+    "pygit2<1.17", # Version 1.18 has no available wheels yet
 ]
 
 [dependency-groups]

requirements.txt

@@ -2,26 +2,26 @@
 #    uv export --no-dev --no-group lint --no-hashes -o requirements.txt
 -e .
 aiohappyeyeballs==2.4.4
-aiohttp==3.11.10
+aiohttp==3.11.11
 aiohttp-retry==2.9.1
-aiosignal==1.3.1
+aiosignal==1.3.2
 altair==5.5.0
 amqp==5.3.1
 annotated-types==0.7.0
 antlr4-python3-runtime==4.9.3
-anyio==4.7.0
+anyio==4.8.0
 appdirs==1.4.4
-asyncssh==2.18.0
+asyncssh==2.19.0
 atpublic==5.0
-attrs==24.2.0
+attrs==24.3.0
 billiard==4.2.1
 blinker==1.9.0
 cachetools==5.5.0
 celery==5.4.0
-certifi==2024.8.30
+certifi==2024.12.14
 cffi==1.17.1
-charset-normalizer==3.4.0
-click==8.1.7
+charset-normalizer==3.4.1
+click==8.1.8
 click-didyoumean==0.3.1
 click-plugins==1.1.1
 click-repl==0.3.0
@@ -35,70 +35,70 @@ dictdiffer==0.9.0
 diskcache==5.6.3
 distro==1.9.0
 dpath==2.2.0
-dulwich==0.22.6
+dulwich==0.22.7
 dvc==3.58.0
 dvc-data==3.16.7
 dvc-http==2.32.0
 dvc-objects==5.1.0
 dvc-render==1.0.2
 dvc-studio-client==0.21.0
 dvc-task==0.40.2
-dvclive==3.48.0
+dvclive==3.48.1
 entrypoints==0.4
 fastapi==0.115.6
 filelock==3.16.1
 flatten-dict==0.4.2
 flufl-lock==8.1.0
 fonttools==4.55.3
 frozenlist==1.5.0
-fsspec==2024.10.0
+fsspec==2024.12.0
 funcy==2.0
-gitdb==4.0.11
-gitpython==3.1.43
+gitdb==4.0.12
+gitpython==3.1.44
 grandalf==0.8
 greenlet==3.1.1 ; (python_full_version < '3.13' and platform_machine == 'AMD64') or (python_full_version < '3.13' and platform_machine == 'WIN32') or (python_full_version < '3.13' and platform_machine == 'aarch64') or (python_full_version < '3.13' and platform_machine == 'amd64') or (python_full_version < '3.13' and platform_machine == 'ppc64le') or (python_full_version < '3.13' and platform_machine == 'win32') or (python_full_version < '3.13' and platform_machine == 'x86_64')
 gto==1.7.2
 hydra-core==1.3.2
 idna==3.10
 iterative-telemetry==0.0.9
-jinja2==3.1.4
+jinja2==3.1.5
 joblib==1.4.2
 jsonschema==4.23.0
 jsonschema-specifications==2024.10.1
-kiwisolver==1.4.7
+kiwisolver==1.4.8
 kombu==5.4.2
 markdown-it-py==3.0.0
 markupsafe==3.0.2
-matplotlib==3.9.3
+matplotlib==3.10.0
 mdurl==0.1.2
 multidict==6.1.0
-narwhals==1.17.0
+narwhals==1.21.1
 networkx==3.4.2
-numpy==2.2.0
+numpy==2.2.1
 nvidia-ml-py==12.560.30
 omegaconf==2.3.0
-orjson==3.10.12 ; implementation_name == 'cpython'
+orjson==3.10.13 ; implementation_name == 'cpython'
 packaging==24.2
 pandas==2.2.3
 pathspec==0.12.1
-pillow==11.0.0
+pillow==11.1.0
 platformdirs==4.3.6
 prompt-toolkit==3.0.48
 propcache==0.2.1
-protobuf==5.29.1
-psutil==6.1.0
+protobuf==5.29.2
+psutil==6.1.1
 pyarrow==18.1.0
 pycparser==2.22
-pydantic==2.10.3
-pydantic-core==2.27.1
+pydantic==2.10.4
+pydantic-core==2.27.2
 pydeck==0.9.1
-pydot==3.0.3
+pydot==3.0.4
 pygit2==1.16.0
-pygments==2.18.0
+pygments==2.19.1
 pygtrie==2.5.0
 pymssql==2.3.2
 pynvml==12.0.0
-pyparsing==3.2.0
+pyparsing==3.2.1
 python-dateutil==2.9.0.post0
 python-dotenv==1.0.1
 pytz==2024.2
@@ -109,24 +109,24 @@ relplot==1.0
 requests==2.32.3
 rich==13.9.4
 rpds-py==0.22.3
-ruamel-yaml==0.18.6
+ruamel-yaml==0.18.10
 ruamel-yaml-clib==0.2.12 ; python_full_version < '3.13' and platform_python_implementation == 'CPython'
 scikit-learn==1.6.0
-scipy==1.14.1
+scipy==1.15.0
 scmrepo==3.3.9
 seaborn==0.13.2
-semver==2.13.0
-setuptools==75.6.0
+semver==3.0.2
+setuptools==75.7.0
 shellingham==1.5.4
 shortuuid==1.0.13
 shtab==1.7.1
 six==1.17.0
-smmap==5.0.1
+smmap==5.0.2
 sniffio==1.3.1
 sqlalchemy==2.0.36
 sqltrie==0.11.1
 starlette==0.41.3
-streamlit==1.41.0
+streamlit==1.41.1
 tabulate==0.9.0
 tenacity==9.0.0
 threadpoolctl==3.5.0
@@ -138,10 +138,10 @@ tqdm==4.67.1
 typer==0.15.1
 typing-extensions==4.12.2
 tzdata==2024.2
-urllib3==2.2.3
+urllib3==2.3.0
 vine==5.1.0
 voluptuous==0.15.2
-watchdog==6.0.0 ; platform_system != 'Darwin'
+watchdog==6.0.0 ; sys_platform != 'darwin'
 wcwidth==0.2.13
 yarl==1.18.3
 zc-lockfile==3.0.post1

tests/test_api.py

@@ -60,6 +60,7 @@ async def test_predict_endpoint(monkeypatch):
         app, "create_treatment_groups", lambda x, y, z, q: x.assign(treatment_group=1)
     )
     monkeypatch.setattr(app, "CLINIC_CONFIG", create_unit_test_clinic_config())
+    monkeypatch.setattr(app_helpers, "CLINIC_CONFIG", create_unit_test_clinic_config())
     monkeypatch.setenv("DB_USER", "")
     monkeypatch.setenv("X_API_KEY", "test")